Detailed information of immunity protein


Summary

Immunity protein ID IMU00190 experimental
Cognate effector EFF00014 experimental
Related T6SS (Type) T6SS00003 experimental (Type i3)
Strain Pseudomonas aeruginosa PAO1
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Description Tsi1
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) PA1845 (Tsi1,Tai1)
Coordinates (Strand) 2004374..2004892 (-)
NCBI ID 15597042
RefSeq NC_002516
Uniprot ID TSI1_PSEAE
KEGG ID pae:PA1845
PDB ID 4EQA, 4FQB, 4FGI, 3VPJ
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
No matching records found
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-172MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
SP(Sec/SPI)0.9976pos: 19-20. AQA-AD.MKLLAGSFAALFLSLSAQA


  Protein sequence: 173 a.a.    .

>IMU00190 NC_002516:c2004892-2004374 [Pseudomonas aeruginosa PAO1]
MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCR
IEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVK
RSLAPFCQTAKK*

  Nucleotide sequence: 519 bp    .

>IMU00190 NC_002516:c2004892-2004374 [Pseudomonas aeruginosa PAO1]
ATGAAACTGCTCGCCGGCAGCTTCGCCGCTCTCTTCCTGAGCCTTTCGGCCCAGGCGGCGGACTGTACTTTCACCCAGCT
GGAAATCGTGCCCCAGTTCGGCTCGCCGAACATGTTCGGCGGCGAGGACGAGCACGTCCGCGTGATGTTCAGCAACGAGG
ATCCCAACGACGACAACCCCGATGCCTTTCCCGAACCGCCGGTCTACCTGGCCGACCGCGACAGCGGCAACGATTGCCGC
ATAGAGGACGGCGGCATCTGGTCGCGCGGCGGCGTGTTCCTGAGCCAGGACGGCCGGCGCGTGCTGATGCATGAATTCAG
CGGCTCCAGCGCCGAGCTGGTGTCCTACGACAGCGCCACCTGCAAGGTGGTGCACCGCGAGGACATCTCCGGCCAGCGCT
GGGCGGTGGACAAGGACGGGCTGCGCCTGGGTCAGAAATGCTCGGGCGAATCCGTCGACAGCTGCGCGAAGATCGTGAAG
CGTTCGCTCGCGCCGTTCTGCCAGACCGCAAAGAAATGA