Detailed information of effector


Summary

Effector ID EFF00014 experimental
Effector type Tae
Cognate immunity protein IMU00190 experimental
Related T6SS (Type) T6SS00003 experimental (Type i3)
Strain Pseudomonas aeruginosa PAO1
Replicon chromosome
Sequence Protein sequence (155 a.a.); Nucleotide sequence (465 bp)
Description Tse1 (Tae1); peptidoglycan amidase
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) PA1844 (Tse1, Tae1)
Coordinates (Strand) 2003868..2004332 (-)
NCBI ID 15597041
RefSeq NC_002516
Uniprot ID TSE1_PSEAE
KEGG ID pae:PA1844
PDB ID 4FQB, 3VPI, 4FGD, 4FQA, 4EQ8, 4F0V, 4FGE, 3VPJ, 4EOB, 4F0W, 4FGI, 4F4M, 4EQA

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-154 MDSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9793 - -



  Protein sequence: 155 a.a.    .

>EFF00014 NC_002516:c2004332-2003868 [Pseudomonas aeruginosa PAO1]
MDSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLV
IAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS*

  Nucleotide sequence: 465 bp    .

>EFF00014 NC_002516:c2004332-2003868 [Pseudomonas aeruginosa PAO1]
ATGGACAGTCTCGATCAATGCATCGTCAACGCCTGCAAGAACAGCTGGGACAAGAGCTACCTGGCCGGCACCCCGAACAA
GGACAACTGTTCCGGCTTCGTCCAGTCGGTGGCCGCCGAGCTGGGCGTACCGATGCCCCGCGGCAACGCCAACGCCATGG
TCGACGGCCTGGAGCAGAGCTGGACCAAGCTCGCCTCCGGCGCCGAGGCCGCGCAGAAGGCGGCCCAGGGCTTCCTGGTG
ATCGCCGGCCTGAAGGGCCGCACCTACGGGCACGTCGCGGTGGTCATCAGCGGTCCGCTGTATCGGCAGAAGTACCCGAT
GTGCTGGTGCGGCAGCATCGCCGGCGCGGTCGGCCAGAGCCAGGGCCTGAAGTCGGTCGGCCAGGTGTGGAATCGCACCG
ACCGCGACCGCCTCAACTACTACGTCTACTCCCTGGCCAGTTGCAGCCTGCCCAGGGCCAGTTGA