Detailed information of immunity protein


Summary

Immunity protein ID IMU00108 experimental
Cognate effector EFF00544 experimental
Related T6SS (Type) T6SS00443 experimental (Type i3)
Strain Methylomonas methanica MC09
Replicon chromosome
Sequence Protein sequence (77 a.a.); Nucleotide sequence (231 bp)
Description Tsi2
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) Metme_3456 (Tsi2_MM)
Coordinates (Strand) 3823796..3824026 (-)
NCBI ID 333985113
RefSeq NC_015572
Uniprot ID UPI00020EB7F4
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-76 MQLKPQTLMVAIQCVAAEIKSLDRHLNEEEPPNAGELEQLLVSFDLAADDLKLAYQDLHQKYGELPTYEELISRIR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6576 - -


  Protein sequence: 77 a.a.    .

>IMU00108 NC_015572:c3824026-3823796 [Methylomonas methanica MC09]
MQLKPQTLMVAIQCVAAEIKSLDRHLNEEEPPNAGELEQLLVSFDLAADDLKLAYQDLHQKYGELPTYEELISRIR*

  Nucleotide sequence: 231 bp    .

>IMU00108 NC_015572:c3824026-3823796 [Methylomonas methanica MC09]
ATGCAACTAAAACCGCAAACATTAATGGTCGCAATTCAATGCGTAGCCGCCGAAATCAAGTCGTTAGACCGGCATCTTAA
TGAGGAAGAACCTCCGAACGCAGGCGAGCTAGAGCAATTACTTGTTAGTTTTGATTTGGCAGCAGATGACCTTAAACTGG
CCTATCAAGATTTACATCAGAAATATGGTGAGTTACCAACATATGAAGAACTTATCTCCCGGATTCGGTAA