Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00080  |
| Cognate effector | EFF00019 |
| Related T6SS (Type) | T6SS00004 (Type i1) |
| Strain | Pseudomonas aeruginosa PAO1 |
| Replicon | chromosome |
| Sequence | Protein sequence (233 a.a.); Nucleotide sequence (699 bp) |
| Description | Tli5 |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | PA3488 (Tli5) |
| Coordinates (Strand) | 3906391..3907089 (+) |
| NCBI ID | 15598684 |
| RefSeq | NC_002516 |
| Uniprot ID | UPI00000C5A36 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Tli4_C | PF18426.3 | 1.3e-07 | 70..121 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-232 | MEAKIPLAKIYEHDLGIPDSHILGSKNIPFHVLLWRNQRVYYFTFSKPTENSAQRIKDLIARFRTRELYEVPNEPGICFPYGFIADDGKTAYELKNSLRFTRTPNVIFSLLTASANDPWQTRPTSGLYDSDFRPGYDRQKWKKSALLDSLHIGKRLAAFEGWRLDPRPDSGERERAWFGLAHTGGTLDPLVAIQVQTFQKGTDDLTDYTPPPEEVLPRLKALSQSIEQRLAR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9980 | - | - |
Protein sequence: 233 a.a. .
>IMU00080 NC_002516:3906391-3907089 [Pseudomonas aeruginosa PAO1]
MEAKIPLAKIYEHDLGIPDSHILGSKNIPFHVLLWRNQRVYYFTFSKPTENSAQRIKDLIARFRTRELYEVPNEPGICFP
YGFIADDGKTAYELKNSLRFTRTPNVIFSLLTASANDPWQTRPTSGLYDSDFRPGYDRQKWKKSALLDSLHIGKRLAAFE
GWRLDPRPDSGERERAWFGLAHTGGTLDPLVAIQVQTFQKGTDDLTDYTPPPEEVLPRLKALSQSIEQRLAR*
MEAKIPLAKIYEHDLGIPDSHILGSKNIPFHVLLWRNQRVYYFTFSKPTENSAQRIKDLIARFRTRELYEVPNEPGICFP
YGFIADDGKTAYELKNSLRFTRTPNVIFSLLTASANDPWQTRPTSGLYDSDFRPGYDRQKWKKSALLDSLHIGKRLAAFE
GWRLDPRPDSGERERAWFGLAHTGGTLDPLVAIQVQTFQKGTDDLTDYTPPPEEVLPRLKALSQSIEQRLAR*
Nucleotide sequence: 699 bp .
>IMU00080 NC_002516:3906391-3907089 [Pseudomonas aeruginosa PAO1]
ATGGAGGCCAAGATTCCTCTCGCCAAGATCTACGAACACGATCTCGGCATCCCCGACTCCCATATCCTTGGCAGCAAGAA
TATCCCCTTCCATGTCCTGCTCTGGCGCAACCAGCGGGTCTATTACTTCACCTTCTCCAAGCCGACCGAGAACTCCGCCC
AGCGCATCAAGGACCTAATCGCCCGTTTCCGCACCCGCGAGCTTTACGAAGTGCCGAACGAACCGGGCATCTGCTTCCCC
TACGGCTTTATCGCCGACGACGGCAAGACCGCCTACGAATTGAAGAACAGCCTGCGTTTCACCCGCACGCCCAACGTGAT
CTTCAGCCTGCTCACCGCCTCGGCCAACGATCCCTGGCAGACCCGTCCCACCAGCGGCCTCTACGACAGCGACTTCCGTC
CCGGCTACGACCGGCAGAAATGGAAAAAAAGCGCGCTGCTCGACAGCCTCCACATCGGCAAGCGCCTGGCCGCCTTCGAA
GGCTGGCGCCTCGACCCGCGCCCCGACTCCGGCGAACGGGAACGCGCCTGGTTCGGCCTGGCCCATACAGGCGGCACCCT
CGATCCGCTGGTAGCGATCCAGGTGCAGACCTTCCAGAAAGGCACCGACGACCTCACCGACTACACCCCGCCCCCCGAAG
AAGTACTGCCCCGCCTGAAGGCCCTGAGCCAAAGCATCGAGCAGCGGCTGGCGCGCTGA
ATGGAGGCCAAGATTCCTCTCGCCAAGATCTACGAACACGATCTCGGCATCCCCGACTCCCATATCCTTGGCAGCAAGAA
TATCCCCTTCCATGTCCTGCTCTGGCGCAACCAGCGGGTCTATTACTTCACCTTCTCCAAGCCGACCGAGAACTCCGCCC
AGCGCATCAAGGACCTAATCGCCCGTTTCCGCACCCGCGAGCTTTACGAAGTGCCGAACGAACCGGGCATCTGCTTCCCC
TACGGCTTTATCGCCGACGACGGCAAGACCGCCTACGAATTGAAGAACAGCCTGCGTTTCACCCGCACGCCCAACGTGAT
CTTCAGCCTGCTCACCGCCTCGGCCAACGATCCCTGGCAGACCCGTCCCACCAGCGGCCTCTACGACAGCGACTTCCGTC
CCGGCTACGACCGGCAGAAATGGAAAAAAAGCGCGCTGCTCGACAGCCTCCACATCGGCAAGCGCCTGGCCGCCTTCGAA
GGCTGGCGCCTCGACCCGCGCCCCGACTCCGGCGAACGGGAACGCGCCTGGTTCGGCCTGGCCCATACAGGCGGCACCCT
CGATCCGCTGGTAGCGATCCAGGTGCAGACCTTCCAGAAAGGCACCGACGACCTCACCGACTACACCCCGCCCCCCGAAG
AAGTACTGCCCCGCCTGAAGGCCCTGAGCCAAAGCATCGAGCAGCGGCTGGCGCGCTGA