Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00057  |
| Cognate effector | EFF01311 |
| Related T6SS (Type) | T6SS00910 (Type iii) |
| Strain | Flavobacterium johnsoniae UW101 |
| Replicon | chromosome |
| Sequence | Protein sequence (187 a.a.); Nucleotide sequence (561 bp) |
| Description | Fti1 |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | Fjoh_3256 (Fti1) |
| Coordinates (Strand) | 3895387..3895947 (-) |
| NCBI ID | 146301000 |
| RefSeq | NC_009441 |
| Uniprot ID | UPI00006E8BD4 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-1 | M |
| Transmembrane helix | 2-17 | IYTLLIILLLEIIFIY |
| Outside | 18-26 | LKKWQTKRK |
| Transmembrane helix | 27-49 | ILIAICTVIITVIIYVVLLAVLW |
| Inside | 50-186 | NSSTDKREDIQQVNEYQVQNFKTILFNNQFNKKVYVIINFEYTKDEIKKNNLKIVDFYNKTDSILLKPNEKNSIFLPVYNNTFVRFPINFKVTIKDSVSKVIKSYDEELFYKESKSEPKIEKVQEKYKSDEWELIIK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9978 | - | - |
Protein sequence: 187 a.a. .
>IMU00057 NC_009441:c3895947-3895387 [Flavobacterium johnsoniae UW101]
MIYTLLIILLLEIIFIYLKKWQTKRKILIAICTVIITVIIYVVLLAVLWNSSTDKREDIQQVNEYQVQNFKTILFNNQFN
KKVYVIINFEYTKDEIKKNNLKIVDFYNKTDSILLKPNEKNSIFLPVYNNTFVRFPINFKVTIKDSVSKVIKSYDEELFY
KESKSEPKIEKVQEKYKSDEWELIIK*
MIYTLLIILLLEIIFIYLKKWQTKRKILIAICTVIITVIIYVVLLAVLWNSSTDKREDIQQVNEYQVQNFKTILFNNQFN
KKVYVIINFEYTKDEIKKNNLKIVDFYNKTDSILLKPNEKNSIFLPVYNNTFVRFPINFKVTIKDSVSKVIKSYDEELFY
KESKSEPKIEKVQEKYKSDEWELIIK*
Nucleotide sequence: 561 bp .
>IMU00057 NC_009441:c3895947-3895387 [Flavobacterium johnsoniae UW101]
ATGATTTATACTTTATTGATTATTCTGTTGTTAGAAATTATTTTCATTTATTTAAAAAAATGGCAGACTAAAAGAAAGAT
TTTAATAGCAATTTGTACAGTAATCATTACAGTGATTATATATGTTGTTTTATTAGCAGTACTTTGGAATTCATCGACGG
ATAAAAGAGAAGATATTCAGCAGGTGAATGAATATCAAGTGCAAAACTTTAAAACAATTTTGTTCAATAATCAGTTTAAT
AAAAAAGTGTATGTAATTATCAATTTTGAATACACTAAAGATGAGATAAAAAAAAATAATTTAAAAATTGTTGATTTTTA
TAATAAAACAGATTCTATACTATTAAAACCAAACGAAAAGAATAGCATTTTCCTGCCAGTTTACAATAATACATTTGTTC
GATTTCCAATAAATTTTAAAGTTACAATCAAAGATTCCGTATCTAAAGTAATTAAAAGTTATGATGAAGAATTATTTTAT
AAAGAATCAAAATCAGAGCCAAAAATTGAAAAAGTACAAGAAAAATACAAATCTGACGAATGGGAATTAATAATTAAATA
G
ATGATTTATACTTTATTGATTATTCTGTTGTTAGAAATTATTTTCATTTATTTAAAAAAATGGCAGACTAAAAGAAAGAT
TTTAATAGCAATTTGTACAGTAATCATTACAGTGATTATATATGTTGTTTTATTAGCAGTACTTTGGAATTCATCGACGG
ATAAAAGAGAAGATATTCAGCAGGTGAATGAATATCAAGTGCAAAACTTTAAAACAATTTTGTTCAATAATCAGTTTAAT
AAAAAAGTGTATGTAATTATCAATTTTGAATACACTAAAGATGAGATAAAAAAAAATAATTTAAAAATTGTTGATTTTTA
TAATAAAACAGATTCTATACTATTAAAACCAAACGAAAAGAATAGCATTTTCCTGCCAGTTTACAATAATACATTTGTTC
GATTTCCAATAAATTTTAAAGTTACAATCAAAGATTCCGTATCTAAAGTAATTAAAAGTTATGATGAAGAATTATTTTAT
AAAGAATCAAAATCAGAGCCAAAAATTGAAAAAGTACAAGAAAAATACAAATCTGACGAATGGGAATTAATAATTAAATA
G