Detailed information of immunity protein


Summary

Immunity protein ID IMU00045 experimental
Cognate effector EFF01279 experimental
Related T6SS (Type) T6SS00005 experimental (Type i4a)
Strain Pseudomonas aeruginosa PAO1
Replicon chromosome
Sequence Protein sequence (290 a.a.); Nucleotide sequence (870 bp)
Description PA5087
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) PA5087
Coordinates (Strand) 5725479..5726348 (-)
NCBI ID 15600280
RefSeq NC_002516
Uniprot ID Q9HU96_PSEAE
KEGG ID pae:PA5087
PDB ID 5JKP
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
Sel1PF08238.146.5e-0575..109
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-289MAIGLWAVLCLAGVPVMANSKPFVCANEKDHLPPLDPQADAWYREAAALAKPDTLRPWGRIVEIYSKAVERGHWKAMHNLANLYRTGWPGGVEKDPQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGKLYIYVAKEKELGLAYASCASSQGYAPASYELGSYYELVENNYPKALSYYQVSVSQGGRSAAFFLSRVFGKRTPPSSAMWYTPDEKLEKFYYSLYLQIDADPDLRFPNLVKYNPLPPHPVQGYDAARPDWKPGQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
SP(Sec/SPI)0.9846pos: 18-19. VMA-NS.MAIGLWAVLCLAGVPVMA


  Protein sequence: 290 a.a.    .

>IMU00045 NC_002516:c5726348-5725479 [Pseudomonas aeruginosa PAO1]
MAIGLWAVLCLAGVPVMANSKPFVCANEKDHLPPLDPQADAWYREAAALAKPDTLRPWGRIVEIYSKAVERGHWKAMHNL
ANLYRTGWPGGVEKDPQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGKLYIY
VAKEKELGLAYASCASSQGYAPASYELGSYYELVENNYPKALSYYQVSVSQGGRSAAFFLSRVFGKRTPPSSAMWYTPDE
KLEKFYYSLYLQIDADPDLRFPNLVKYNPLPPHPVQGYDAARPDWKPGQ*

  Nucleotide sequence: 870 bp    .

>IMU00045 NC_002516:c5726348-5725479 [Pseudomonas aeruginosa PAO1]
ATGGCTATTGGACTTTGGGCCGTGCTCTGTCTTGCAGGCGTCCCCGTGATGGCCAACAGCAAACCATTTGTCTGCGCTAA
TGAAAAAGACCATCTGCCGCCGTTGGATCCGCAAGCCGATGCTTGGTACCGCGAAGCAGCAGCCTTGGCCAAGCCCGATA
CTCTGCGGCCCTGGGGCCGTATCGTCGAGATTTACAGCAAGGCAGTGGAGCGCGGTCATTGGAAGGCCATGCATAATTTG
GCGAATCTTTATCGTACAGGGTGGCCCGGAGGAGTAGAAAAAGATCCGCAGAAGGCATTGGATCTCTATCAAAAGATGAT
AGATCTGGATGTGCCTCAGGGGTTCTATGATATGGGGGCAATGATTGGTAATCGTGCCGGTGTTAAGAACCCTGCTACCG
ATGGTCTGACCTTCTTGGATAAAGCCGCTAGTTTGGGGAACCCGCCAGCACTGACCGAGTTGGGTAAACTCTATATTTAT
GTGGCCAAGGAAAAGGAATTGGGGCTGGCGTATGCCAGTTGTGCTTCCAGTCAAGGTTATGCTCCGGCGAGCTATGAGCT
TGGAAGCTACTATGAGTTGGTTGAAAATAATTATCCAAAGGCACTTAGCTACTATCAAGTCTCCGTCTCTCAAGGCGGCA
GGAGTGCAGCCTTTTTTCTCTCGCGCGTCTTCGGAAAGAGGACGCCTCCTTCAAGTGCAATGTGGTATACGCCGGATGAA
AAGCTTGAGAAATTCTACTACTCCCTCTATCTGCAAATTGATGCCGACCCCGATCTTCGTTTTCCCAATTTGGTAAAATA
TAACCCCTTGCCACCCCACCCCGTCCAGGGCTACGACGCAGCTCGACCCGACTGGAAGCCGGGTCAGTGA