Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00045  |
| Cognate effector | EFF01279 |
| Related T6SS (Type) | T6SS00005 (Type i4a) |
| Strain | Pseudomonas aeruginosa PAO1 |
| Replicon | chromosome |
| Sequence | Protein sequence (290 a.a.); Nucleotide sequence (870 bp) |
| Description | PA5087 |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | PA5087 |
| Coordinates (Strand) | 5725479..5726348 (-) |
| NCBI ID | 15600280 |
| RefSeq | NC_002516 |
| Uniprot ID | Q9HU96_PSEAE |
| KEGG ID | pae:PA5087 |
| PDB ID | 5JKP |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Sel1 | PF08238.14 | 6.5e-05 | 75..109 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-289 | MAIGLWAVLCLAGVPVMANSKPFVCANEKDHLPPLDPQADAWYREAAALAKPDTLRPWGRIVEIYSKAVERGHWKAMHNLANLYRTGWPGGVEKDPQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGKLYIYVAKEKELGLAYASCASSQGYAPASYELGSYYELVENNYPKALSYYQVSVSQGGRSAAFFLSRVFGKRTPPSSAMWYTPDEKLEKFYYSLYLQIDADPDLRFPNLVKYNPLPPHPVQGYDAARPDWKPGQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| SP(Sec/SPI) | 0.9846 | pos: 18-19. VMA-NS. | MAIGLWAVLCLAGVPVMA |
Protein sequence: 290 a.a. .
>IMU00045 NC_002516:c5726348-5725479 [Pseudomonas aeruginosa PAO1]
MAIGLWAVLCLAGVPVMANSKPFVCANEKDHLPPLDPQADAWYREAAALAKPDTLRPWGRIVEIYSKAVERGHWKAMHNL
ANLYRTGWPGGVEKDPQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGKLYIY
VAKEKELGLAYASCASSQGYAPASYELGSYYELVENNYPKALSYYQVSVSQGGRSAAFFLSRVFGKRTPPSSAMWYTPDE
KLEKFYYSLYLQIDADPDLRFPNLVKYNPLPPHPVQGYDAARPDWKPGQ*
MAIGLWAVLCLAGVPVMANSKPFVCANEKDHLPPLDPQADAWYREAAALAKPDTLRPWGRIVEIYSKAVERGHWKAMHNL
ANLYRTGWPGGVEKDPQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGKLYIY
VAKEKELGLAYASCASSQGYAPASYELGSYYELVENNYPKALSYYQVSVSQGGRSAAFFLSRVFGKRTPPSSAMWYTPDE
KLEKFYYSLYLQIDADPDLRFPNLVKYNPLPPHPVQGYDAARPDWKPGQ*
Nucleotide sequence: 870 bp .
>IMU00045 NC_002516:c5726348-5725479 [Pseudomonas aeruginosa PAO1]
ATGGCTATTGGACTTTGGGCCGTGCTCTGTCTTGCAGGCGTCCCCGTGATGGCCAACAGCAAACCATTTGTCTGCGCTAA
TGAAAAAGACCATCTGCCGCCGTTGGATCCGCAAGCCGATGCTTGGTACCGCGAAGCAGCAGCCTTGGCCAAGCCCGATA
CTCTGCGGCCCTGGGGCCGTATCGTCGAGATTTACAGCAAGGCAGTGGAGCGCGGTCATTGGAAGGCCATGCATAATTTG
GCGAATCTTTATCGTACAGGGTGGCCCGGAGGAGTAGAAAAAGATCCGCAGAAGGCATTGGATCTCTATCAAAAGATGAT
AGATCTGGATGTGCCTCAGGGGTTCTATGATATGGGGGCAATGATTGGTAATCGTGCCGGTGTTAAGAACCCTGCTACCG
ATGGTCTGACCTTCTTGGATAAAGCCGCTAGTTTGGGGAACCCGCCAGCACTGACCGAGTTGGGTAAACTCTATATTTAT
GTGGCCAAGGAAAAGGAATTGGGGCTGGCGTATGCCAGTTGTGCTTCCAGTCAAGGTTATGCTCCGGCGAGCTATGAGCT
TGGAAGCTACTATGAGTTGGTTGAAAATAATTATCCAAAGGCACTTAGCTACTATCAAGTCTCCGTCTCTCAAGGCGGCA
GGAGTGCAGCCTTTTTTCTCTCGCGCGTCTTCGGAAAGAGGACGCCTCCTTCAAGTGCAATGTGGTATACGCCGGATGAA
AAGCTTGAGAAATTCTACTACTCCCTCTATCTGCAAATTGATGCCGACCCCGATCTTCGTTTTCCCAATTTGGTAAAATA
TAACCCCTTGCCACCCCACCCCGTCCAGGGCTACGACGCAGCTCGACCCGACTGGAAGCCGGGTCAGTGA
ATGGCTATTGGACTTTGGGCCGTGCTCTGTCTTGCAGGCGTCCCCGTGATGGCCAACAGCAAACCATTTGTCTGCGCTAA
TGAAAAAGACCATCTGCCGCCGTTGGATCCGCAAGCCGATGCTTGGTACCGCGAAGCAGCAGCCTTGGCCAAGCCCGATA
CTCTGCGGCCCTGGGGCCGTATCGTCGAGATTTACAGCAAGGCAGTGGAGCGCGGTCATTGGAAGGCCATGCATAATTTG
GCGAATCTTTATCGTACAGGGTGGCCCGGAGGAGTAGAAAAAGATCCGCAGAAGGCATTGGATCTCTATCAAAAGATGAT
AGATCTGGATGTGCCTCAGGGGTTCTATGATATGGGGGCAATGATTGGTAATCGTGCCGGTGTTAAGAACCCTGCTACCG
ATGGTCTGACCTTCTTGGATAAAGCCGCTAGTTTGGGGAACCCGCCAGCACTGACCGAGTTGGGTAAACTCTATATTTAT
GTGGCCAAGGAAAAGGAATTGGGGCTGGCGTATGCCAGTTGTGCTTCCAGTCAAGGTTATGCTCCGGCGAGCTATGAGCT
TGGAAGCTACTATGAGTTGGTTGAAAATAATTATCCAAAGGCACTTAGCTACTATCAAGTCTCCGTCTCTCAAGGCGGCA
GGAGTGCAGCCTTTTTTCTCTCGCGCGTCTTCGGAAAGAGGACGCCTCCTTCAAGTGCAATGTGGTATACGCCGGATGAA
AAGCTTGAGAAATTCTACTACTCCCTCTATCTGCAAATTGATGCCGACCCCGATCTTCGTTTTCCCAATTTGGTAAAATA
TAACCCCTTGCCACCCCACCCCGTCCAGGGCTACGACGCAGCTCGACCCGACTGGAAGCCGGGTCAGTGA