Detailed information of immunity protein


Summary

Immunity protein ID IMU00044 experimental
Cognate effector EFF01279 experimental
Related T6SS (Type) T6SS00005 experimental (Type i4a)
Strain Pseudomonas aeruginosa PAO1
Replicon chromosome
Sequence Protein sequence (214 a.a.); Nucleotide sequence (642 bp)
Description PA5086
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) PA5086
Coordinates (Strand) 5724601..5725242 (-)
NCBI ID 15600279
RefSeq NC_002516
Uniprot ID UPI00000C5EF3
KEGG ID -
PDB ID -

Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
No matching records found

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-213MHNLANLYRTGWPGGVEKDTQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGKFYIYVAKKKDLGLAYTHCAASQGYAPASYELGAYYKIVEHNFPKALVYYQVSVSQGGKSAAFFLSRVFGSETPPASAMWYAPDEKLREAYYSIYKKLEADPDLRFPNLIEDYPLPPHPTQGYDADRPDWKPER



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9910--



  Protein sequence: 214 a.a.    .

>IMU00044 NC_002516:c5725242-5724601 [Pseudomonas aeruginosa PAO1]
MHNLANLYRTGWPGGVEKDTQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGK
FYIYVAKKKDLGLAYTHCAASQGYAPASYELGAYYKIVEHNFPKALVYYQVSVSQGGKSAAFFLSRVFGSETPPASAMWY
APDEKLREAYYSIYKKLEADPDLRFPNLIEDYPLPPHPTQGYDADRPDWKPER*

  Nucleotide sequence: 642 bp    .

>IMU00044 NC_002516:c5725242-5724601 [Pseudomonas aeruginosa PAO1]
ATGCACAACTTGGCGAATCTTTATCGTACAGGGTGGCCCGGAGGAGTAGAAAAAGATACGCAGAAGGCATTGGATCTCTA
TCAAAAGATGATAGATCTGGATGTGCCTCAGGGGTTCTATGATATGGGAGCAATGATTGGAAATCGCGCCGGGGTTAAAA
ACCCTGCAACTGACGGACTTACTTTCCTTGATAAGGCTGCTAGCCTAGGAAATCCGCCGGCACTAACTGAGCTAGGTAAG
TTTTATATATATGTGGCCAAAAAAAAGGATTTGGGGTTGGCGTATACTCACTGTGCTGCTAGTCAGGGTTATGCGCCGGC
TAGTTATGAGCTGGGGGCGTATTACAAGATAGTAGAGCACAATTTCCCAAAGGCACTGGTTTATTATCAGGTGTCAGTCT
CTCAGGGGGGCAAGAGTGCGGCTTTTTTCCTATCACGAGTCTTCGGAAGTGAGACTCCCCCTGCAAGTGCAATGTGGTAC
GCCCCCGACGAAAAGTTGCGAGAAGCGTATTATTCAATCTACAAAAAGCTTGAAGCTGACCCCGACTTACGTTTCCCCAA
TCTGATAGAGGACTATCCTCTGCCTCCTCATCCCACCCAGGGCTACGACGCGGACCGCCCAGACTGGAAGCCGGAGCGGT
AA