Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00044  |
| Cognate effector | EFF01279 |
| Related T6SS (Type) | T6SS00005 (Type i4a) |
| Strain | Pseudomonas aeruginosa PAO1 |
| Replicon | chromosome |
| Sequence | Protein sequence (214 a.a.); Nucleotide sequence (642 bp) |
| Description | PA5086 |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | PA5086 |
| Coordinates (Strand) | 5724601..5725242 (-) |
| NCBI ID | 15600279 |
| RefSeq | NC_002516 |
| Uniprot ID | UPI00000C5EF3 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-213 | MHNLANLYRTGWPGGVEKDTQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGKFYIYVAKKKDLGLAYTHCAASQGYAPASYELGAYYKIVEHNFPKALVYYQVSVSQGGKSAAFFLSRVFGSETPPASAMWYAPDEKLREAYYSIYKKLEADPDLRFPNLIEDYPLPPHPTQGYDADRPDWKPER |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9910 | - | - |
Protein sequence: 214 a.a. .
>IMU00044 NC_002516:c5725242-5724601 [Pseudomonas aeruginosa PAO1]
MHNLANLYRTGWPGGVEKDTQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGK
FYIYVAKKKDLGLAYTHCAASQGYAPASYELGAYYKIVEHNFPKALVYYQVSVSQGGKSAAFFLSRVFGSETPPASAMWY
APDEKLREAYYSIYKKLEADPDLRFPNLIEDYPLPPHPTQGYDADRPDWKPER*
MHNLANLYRTGWPGGVEKDTQKALDLYQKMIDLDVPQGFYDMGAMIGNRAGVKNPATDGLTFLDKAASLGNPPALTELGK
FYIYVAKKKDLGLAYTHCAASQGYAPASYELGAYYKIVEHNFPKALVYYQVSVSQGGKSAAFFLSRVFGSETPPASAMWY
APDEKLREAYYSIYKKLEADPDLRFPNLIEDYPLPPHPTQGYDADRPDWKPER*
Nucleotide sequence: 642 bp .
>IMU00044 NC_002516:c5725242-5724601 [Pseudomonas aeruginosa PAO1]
ATGCACAACTTGGCGAATCTTTATCGTACAGGGTGGCCCGGAGGAGTAGAAAAAGATACGCAGAAGGCATTGGATCTCTA
TCAAAAGATGATAGATCTGGATGTGCCTCAGGGGTTCTATGATATGGGAGCAATGATTGGAAATCGCGCCGGGGTTAAAA
ACCCTGCAACTGACGGACTTACTTTCCTTGATAAGGCTGCTAGCCTAGGAAATCCGCCGGCACTAACTGAGCTAGGTAAG
TTTTATATATATGTGGCCAAAAAAAAGGATTTGGGGTTGGCGTATACTCACTGTGCTGCTAGTCAGGGTTATGCGCCGGC
TAGTTATGAGCTGGGGGCGTATTACAAGATAGTAGAGCACAATTTCCCAAAGGCACTGGTTTATTATCAGGTGTCAGTCT
CTCAGGGGGGCAAGAGTGCGGCTTTTTTCCTATCACGAGTCTTCGGAAGTGAGACTCCCCCTGCAAGTGCAATGTGGTAC
GCCCCCGACGAAAAGTTGCGAGAAGCGTATTATTCAATCTACAAAAAGCTTGAAGCTGACCCCGACTTACGTTTCCCCAA
TCTGATAGAGGACTATCCTCTGCCTCCTCATCCCACCCAGGGCTACGACGCGGACCGCCCAGACTGGAAGCCGGAGCGGT
AA
ATGCACAACTTGGCGAATCTTTATCGTACAGGGTGGCCCGGAGGAGTAGAAAAAGATACGCAGAAGGCATTGGATCTCTA
TCAAAAGATGATAGATCTGGATGTGCCTCAGGGGTTCTATGATATGGGAGCAATGATTGGAAATCGCGCCGGGGTTAAAA
ACCCTGCAACTGACGGACTTACTTTCCTTGATAAGGCTGCTAGCCTAGGAAATCCGCCGGCACTAACTGAGCTAGGTAAG
TTTTATATATATGTGGCCAAAAAAAAGGATTTGGGGTTGGCGTATACTCACTGTGCTGCTAGTCAGGGTTATGCGCCGGC
TAGTTATGAGCTGGGGGCGTATTACAAGATAGTAGAGCACAATTTCCCAAAGGCACTGGTTTATTATCAGGTGTCAGTCT
CTCAGGGGGGCAAGAGTGCGGCTTTTTTCCTATCACGAGTCTTCGGAAGTGAGACTCCCCCTGCAAGTGCAATGTGGTAC
GCCCCCGACGAAAAGTTGCGAGAAGCGTATTATTCAATCTACAAAAAGCTTGAAGCTGACCCCGACTTACGTTTCCCCAA
TCTGATAGAGGACTATCCTCTGCCTCCTCATCCCACCCAGGGCTACGACGCGGACCGCCCAGACTGGAAGCCGGAGCGGT
AA