Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00943 experimental
T6SS type Type Unknown
Strain Escherichia coli strain PE321
Replicon (GenBank) chromosome I (KX118290)
Location 81..2733
Function anti-bacterial
Comment Δhcp-et2Δeti2 mutant was outcompeted by hcp-et2C strains during co-incubation on solid medium.
References
[1] Jiale Ma, Zihao Pan, Jinhu Huang, Min Sun, Chengping Lu, Huochun Yao et al (2017) The Hcp Proteins Fused With Diverse Extended-Toxin Domains Represent a Novel Pattern of Antibacterial Effectors in Type VI Secretion Systems. Virulence. 8(7):1189-1202. [PudMed:28060574]
experimental Experimental investigation has been performed.

T6SS components and genome coordinates

ComponentHet2AHet2B
Number11


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
T6CP016150 Het2A Locus_01 (het2A) 81..2081 + 2001 pseudogene Hcp protein
T6CP016151 Het2B Locus_02 (het2B) 2071..2733 + 663 pseudogene lipoprotein DUF2931
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector