Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00943  |
| T6SS type | Type Unknown |
| Strain | Escherichia coli strain PE321 |
| Replicon (GenBank) | chromosome I (KX118290) |
| Location | 81..2733 |
| Function | anti-bacterial |
| Comment | Δhcp-et2Δeti2 mutant was outcompeted by hcp-et2C strains during co-incubation on solid medium. |
| References | [1] Jiale Ma, Zihao Pan, Jinhu Huang, Min Sun, Chengping Lu, Huochun Yao et al (2017) The Hcp Proteins Fused With Diverse Extended-Toxin Domains Represent a Novel Pattern of Antibacterial Effectors in Type VI Secretion Systems. Virulence. 8(7):1189-1202. [PudMed:28060574] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | Het2A | Het2B |
| Number | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| T6CP016150 | Het2A | Locus_01 (het2A) | 81..2081 | + | 2001 | pseudogene | Hcp protein |
| T6CP016151 | Het2B | Locus_02 (het2B) | 2071..2733 | + | 663 | pseudogene | lipoprotein DUF2931 |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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