Detailed information of component protein


Summary

Component ID T6CP016150
Component protein type Het2A
T6SS ID (Type) T6SS00943 experimental (Type Unknown)
Strain Escherichia coli strain PE321
Replicon chromosome I
Sequence Protein sequence (667 a.a.); Nucleotide sequence (2001 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 81..2081 (+)
NCBI ID -
GenBank KX118290
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF2235 PF09994.11 6.7e-12 368..460
T6SS_HCP PF05638.14 9.1e-12 6..137
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-666 MGDIIYLRITGEQQGDISAGCGTQVSVGNRYQQGHEDEIFVVSFQGGVSNTGFGINHQAIQFCKILDKSSPLLMNCINNNERCRFEFYSYRINKYGKWERYYYIEVRGATLTQNQIIIKENELDYQYITIHYEYIYCKHLTANTEFSYLLTPENYNRLFPPTLLPVEEKPEIPPEREIILTIGVFFDGTGNNLTNTNLRMSSCQPETYGLDVQDLASFNKQCMSKQGKTGSGVQSYLNYYTNIHWLNKLYHKDSEINAKSAKIQREIYIEGIGTENNKADSLVGMGLGNNDTGVIAKTDRAISLLRETLAKIIVDLKDAKLVIKRLQFDVFGFSRGAAAARHFTNRVFERDPVLIKTIATAFQSVEYLGKPSGEVQFLGIFDTVAAIGGLMDGFDPHDGNNFPVKVKLPPGVAKHVFQLTAMNECRYNFCLNSIKESWPELSFPGSHADIGGGYDPLEDEYLFLSRPAIETVLGNVPVEATSAYQKAAQQAELLWRHSTLAPILPSGVLKIESNIDEIASPDHLGNVRKRVAAAVTFRRTITNDWSKIALRVMYEVAKEAGVVFDEIPDDDYYKYPEELSKICDKSISQAKDSLKESTPQPFSSEELLVAGKYLHCSSNWNTVDYRLKNKVSAEVSAFKTFSFVNRPDENWTRTIYDMQGNKQNGI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9673 - -


  Protein sequence: 667 a.a.    

>T6CP016150 KX118290:81-2081 [Escherichia coli] [Het2A]
MGDIIYLRITGEQQGDISAGCGTQVSVGNRYQQGHEDEIFVVSFQGGVSNTGFGINHQAIQFCKILDKSSPLLMNCINNN
ERCRFEFYSYRINKYGKWERYYYIEVRGATLTQNQIIIKENELDYQYITIHYEYIYCKHLTANTEFSYLLTPENYNRLFP
PTLLPVEEKPEIPPEREIILTIGVFFDGTGNNLTNTNLRMSSCQPETYGLDVQDLASFNKQCMSKQGKTGSGVQSYLNYY
TNIHWLNKLYHKDSEINAKSAKIQREIYIEGIGTENNKADSLVGMGLGNNDTGVIAKTDRAISLLRETLAKIIVDLKDAK
LVIKRLQFDVFGFSRGAAAARHFTNRVFERDPVLIKTIATAFQSVEYLGKPSGEVQFLGIFDTVAAIGGLMDGFDPHDGN
NFPVKVKLPPGVAKHVFQLTAMNECRYNFCLNSIKESWPELSFPGSHADIGGGYDPLEDEYLFLSRPAIETVLGNVPVEA
TSAYQKAAQQAELLWRHSTLAPILPSGVLKIESNIDEIASPDHLGNVRKRVAAAVTFRRTITNDWSKIALRVMYEVAKEA
GVVFDEIPDDDYYKYPEELSKICDKSISQAKDSLKESTPQPFSSEELLVAGKYLHCSSNWNTVDYRLKNKVSAEVSAFKT
FSFVNRPDENWTRTIYDMQGNKQNGI*

  Nucleotide sequence: 2001 bp    

>T6CP016150 KX118290:81-2081 [Escherichia coli] [Het2A]
ATGGGTGACATTATATATTTACGCATTACAGGGGAGCAACAAGGGGATATTTCTGCAGGATGCGGGACGCAAGTCTCTGT
CGGGAATCGGTATCAACAGGGACATGAGGATGAAATATTTGTTGTTAGTTTTCAGGGAGGAGTAAGTAACACAGGATTTG
GCATTAATCATCAAGCGATACAATTTTGTAAAATTCTCGATAAAAGCTCACCGCTGCTGATGAATTGCATTAATAATAAC
GAACGATGCCGTTTTGAGTTTTATTCTTATCGTATTAATAAATATGGAAAATGGGAAAGGTATTATTATATTGAAGTCCG
TGGTGCCACGTTAACTCAGAATCAGATTATAATAAAAGAAAATGAACTCGACTATCAGTATATAACAATACACTACGAAT
ATATCTACTGTAAGCATCTTACAGCCAATACAGAATTTAGTTATTTACTCACACCTGAAAATTATAATCGCCTTTTCCCA
CCGACGCTCTTACCTGTCGAGGAAAAACCAGAAATACCGCCTGAACGAGAAATTATCCTCACCATTGGCGTATTCTTTGA
TGGCACAGGAAACAATTTAACCAATACGAATTTACGTATGAGTTCTTGCCAACCAGAAACCTATGGTCTGGATGTCCAGG
ATTTGGCCTCATTTAATAAACAATGTATGAGCAAGCAGGGTAAAACGGGATCCGGAGTACAGAGCTATTTGAATTACTAT
ACGAATATTCATTGGTTGAATAAGTTGTACCATAAAGACTCAGAAATAAATGCGAAGTCAGCTAAAATCCAACGTGAAAT
TTATATTGAAGGAATAGGCACTGAAAATAATAAAGCAGACTCTCTGGTAGGAATGGGGCTAGGAAATAATGATACTGGGG
TAATTGCCAAAACTGACCGTGCGATATCACTGCTTCGTGAGACACTGGCAAAGATTATTGTTGATTTAAAGGATGCTAAA
CTAGTAATTAAGCGTCTACAGTTTGACGTATTTGGCTTTAGTCGTGGGGCGGCAGCCGCACGGCACTTTACTAATCGCGT
ATTTGAACGTGATCCCGTACTGATTAAAACCATTGCGACGGCATTTCAGTCAGTTGAATATTTAGGTAAACCTTCCGGGG
AAGTGCAATTTTTAGGTATTTTTGACACAGTTGCAGCCATCGGAGGGCTGATGGATGGTTTTGACCCTCATGATGGTAAT
AACTTTCCGGTAAAAGTGAAGTTACCGCCAGGTGTGGCCAAACATGTATTCCAGCTCACAGCAATGAACGAATGTCGCTA
TAACTTTTGCCTCAACAGCATAAAGGAAAGCTGGCCAGAATTAAGTTTCCCTGGATCACATGCTGATATTGGTGGCGGCT
ATGACCCACTGGAAGATGAGTACCTGTTTTTAAGTCGCCCGGCGATTGAAACGGTACTGGGAAATGTGCCGGTGGAAGCG
ACAAGCGCTTACCAAAAAGCAGCACAGCAGGCAGAGTTATTGTGGCGCCATTCAACGCTGGCTCCGATTCTGCCTTCTGG
TGTCCTAAAAATTGAATCCAATATTGATGAAATAGCGTCGCCTGACCACTTAGGTAATGTGAGAAAACGGGTCGCTGCAG
CGGTGACATTTCGCAGAACGATCACCAATGACTGGTCAAAGATTGCGTTAAGAGTAATGTATGAAGTCGCTAAAGAGGCA
GGGGTAGTATTTGATGAAATACCAGATGATGATTATTATAAATATCCAGAGGAGTTAAGTAAAATATGTGATAAATCAAT
ATCACAAGCTAAAGATTCATTGAAAGAATCTACGCCACAACCTTTTTCTTCAGAAGAGTTACTCGTTGCCGGAAAATATT
TACACTGTTCTTCCAACTGGAATACCGTCGATTATCGATTAAAAAATAAGGTGTCTGCTGAAGTATCAGCGTTTAAGACG
TTTAGTTTTGTTAATCGGCCGGATGAAAATTGGACCAGAACTATATACGATATGCAAGGGAATAAACAAAATGGAATTTA
A