Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00020  |
| T6SS type | Type Unknown |
| Strain | Yersinia pestis CO92 |
| Replicon (RefSeq) | chromosome (NC_003143) |
| Location | 3042058..3065993 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagJ | TssE | TssI | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPO_RS14535 (nadB) | 3037547..3039148 | - | 1602 | WP_002209671.1 | L-aspartate oxidase | ||
| YPO_RS14540 (rpoE) | 3039372..3039947 | + | 576 | WP_002209672.1 | RNA polymerase sigma factor RpoE | ||
| YPO_RS14545 (rseA) | 3039973..3040629 | + | 657 | WP_002209673.1 | anti-sigma-E factor RseA | ||
| YPO_RS14550 (rseB) | 3040629..3041585 | + | 957 | WP_002209674.1 | sigma-E factor regulatory protein RseB | ||
| YPO_RS14555 (rseC) | 3041582..3042037 | + | 456 | WP_002209675.1 | SoxR-reducing system protein RseC | ||
| YPO_RS14560 | 3042058..3042912 | - | 855 | WP_002209676.1 | hypothetical protein | ||
| YPO_RS14565 (lepA) | 3043412..3045211 | + | 1800 | WP_002209677.1 | translation elongation factor 4 | ||
| YPO_RS14570 (lepB) | 3045221..3046219 | + | 999 | WP_002209678.1 | signal peptidase I | ||
| YPO_RS14575 (rnc) | 3046571..3047251 | + | 681 | WP_002209679.1 | ribonuclease III | ||
| YPO_RS14580 (era) | 3047248..3048159 | + | 912 | WP_002214829.1 | GTPase Era | ||
| YPO_RS14585 (recO) | 3048169..3048894 | + | 726 | WP_002209680.1 | DNA repair protein RecO | ||
| YPO_RS14590 (istA) | 3049021..3050043 | + | 1023 | WP_000255944.1 | IS21-like element IS100 family transposase | ||
| YPO_RS14595 (istB) | 3050043..3050822 | + | 780 | WP_001297096.1 | IS21-like element IS100kyp family helper ATPase IstB | ||
| T6CP000152 | TssL | YPO_RS14600 (tssL) | 3050889..3051674 | + | 786 | pseudogene | type VI secretion system protein TssL |
| T6CP000153 | TssM | YPO_RS14605 (tssM) | 3051683..3055510 | + | 3828 | WP_002214843.1 | type VI secretion system membrane subunit TssM |
| T6CP000154 | TssI | YPO_RS14610 | 3055837..3058569 | + | 2733 | WP_002222244.1 | type VI secretion system Vgr family protein |
| YPO_RS14615 | 3058668..3058928 | + | 261 | WP_002209684.1 | PAAR domain-containing protein | ||
| YPO_RS14620 | 3058934..3059776 | + | 843 | WP_002354537.1 | TagK domain-containing protein | ||
| T6CP012698 | TagJ | YPO_RS14625 | 3059796..3060602 | + | 807 | WP_002209685.1 | ImpE family protein |
| T6CP000155 | TssE | YPO_RS14630 | 3060699..3061178 | + | 480 | WP_002209686.1 | type VI secretion system baseplate subunit TssE |
| YPO_RS14635 | 3061203..3061550 | + | 348 | WP_002209687.1 | hypothetical protein | ||
| YPO_RS14640 | 3061607..3061948 | - | 342 | WP_002209688.1 | alkylphosphonate utilization protein | ||
| YPO_RS14645 | 3062324..3064363 | - | 2040 | WP_002209690.1 | DUF2207 domain-containing protein | ||
| YPO_RS14650 | 3064368..3064910 | - | 543 | WP_002209691.1 | LemA family protein | ||
| YPO_RS14660 | 3065526..3065993 | + | 468 | WP_002209692.1 | hypothetical protein | ||
| YPO_RS14665 (ccmA) | 3066438..3067094 | + | 657 | WP_002209693.1 | cytochrome c biogenesis heme-transporting ATPase CcmA | ||
| YPO_RS14670 (ccmB) | 3067064..3067723 | + | 660 | WP_002209694.1 | heme exporter protein CcmB | ||
| YPO_RS14675 | 3067786..3068523 | + | 738 | WP_002209695.1 | heme ABC transporter permease | ||
| YPO_RS14680 (ccmD) | 3068520..3068822 | + | 303 | WP_002209696.1 | heme exporter protein CcmD | ||
| YPO_RS14685 (ccmE) | 3068819..3069313 | + | 495 | WP_002209697.1 | cytochrome c maturation protein CcmE |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|