Detailed information of component protein
Summary
| Component ID | T6CP000152 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00020  (Type Unknown) |
| Strain | Yersinia pestis CO92 |
| Replicon | chromosome |
| Sequence | Protein sequence (262 a.a.); Nucleotide sequence (786 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | YPO_RS14600 |
| Coordinate (Strand) | 3050889..3051674 (+) |
| NCBI ID | - |
| RefSeq | NC_003143 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| OmpA | PF00691.22 | 2.4e-17 | 155..253 |
| DotU | PF09850.11 | 3.2e-15 | 2..92 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-73 | YADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQSTRDTIPPALSPHGLIAHQNRRRRGIFVPVR |
| Transmembrane helix | 74-96 | VSMLLCGFLIVATFIGCKYFLSV |
| Outside | 97-261 | PESDLLKRMGALQRVVVTPPVAAPKLRLSILLKDEIAKQLVSVDETSNNSKVIFKGDSMFMVGSDNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEIFVNY |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9809 | - | - |
Protein sequence: 262 a.a.
>T6CP000152 NC_003143:3050889-3051674 [Yersinia pestis CO92] [TssL]
YADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQSTRDTIPPALSPHGLIAHQNRRRRGIFVPVRVSMLLCG
FLIVATFIGCKYFLSVPESDLLKRMGALQRVVVTPPVAAPKLRLSILLKDEIAKQLVSVDETSNNSKVIFKGDSMFMVGS
DNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKIRFEGKGETQPV
SSNDDATGRSQNRRVEIFVNY*
YADGLEVLLRILGLGFEGRYSIIEDGDRQLTKIRQGLLTLLQSTRDTIPPALSPHGLIAHQNRRRRGIFVPVRVSMLLCG
FLIVATFIGCKYFLSVPESDLLKRMGALQRVVVTPPVAAPKLRLSILLKDEIAKQLVSVDETSNNSKVIFKGDSMFMVGS
DNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSMPINKPGFPNNQVLSEKRAANVARYMEQAGIPTDKIRFEGKGETQPV
SSNDDATGRSQNRRVEIFVNY*
Nucleotide sequence: 786 bp
>T6CP000152 NC_003143:3050889-3051674 [Yersinia pestis CO92] [TssL]
TATGCGGATGGTTTAGAGGTTTTGCTGCGCATTTTAGGGCTCGGTTTTGAGGGGCGCTACAGCATTATCGAAGATGGTGA
TCGGCAATTAACTAAAATACGCCAAGGGTTGCTGACGCTGCTCCAAAGTACCCGAGACACGATCCCACCGGCACTTTCTC
CGCATGGGTTGATCGCACATCAAAACAGAAGACGGCGGGGCATTTTTGTTCCGGTGCGCGTATCCATGCTGTTGTGTGGT
TTCCTCATTGTCGCGACCTTTATTGGATGTAAATACTTTCTCTCGGTACCGGAAAGTGACTTGCTAAAAAGAATGGGAGC
ATTGCAACGTGTGGTTGTGACGCCACCCGTTGCCGCACCAAAACTTCGACTGTCTATTTTATTAAAAGATGAGATAGCGA
AGCAGTTAGTCAGTGTTGATGAAACGAGCAACAACAGCAAAGTCATCTTTAAAGGCGACTCTATGTTTATGGTCGGCTCG
GATAACGTCAGACCTGAAATGATTGACGTAATTAAACGCGTCGCGCAGGAAGTGCATCGCGTTAAAGGGGCAATCCTCAT
CGTCGGGCATACAGACTCTATGCCGATTAATAAACCCGGCTTCCCTAATAACCAGGTACTTTCCGAAAAACGCGCGGCCA
ATGTTGCACGCTATATGGAGCAGGCCGGTATTCCAACCGACAAAATTCGGTTTGAGGGCAAGGGGGAAACGCAACCGGTT
AGCAGCAATGACGATGCGACAGGACGTTCGCAAAACCGCCGCGTAGAAATTTTTGTTAATTATTGA
TATGCGGATGGTTTAGAGGTTTTGCTGCGCATTTTAGGGCTCGGTTTTGAGGGGCGCTACAGCATTATCGAAGATGGTGA
TCGGCAATTAACTAAAATACGCCAAGGGTTGCTGACGCTGCTCCAAAGTACCCGAGACACGATCCCACCGGCACTTTCTC
CGCATGGGTTGATCGCACATCAAAACAGAAGACGGCGGGGCATTTTTGTTCCGGTGCGCGTATCCATGCTGTTGTGTGGT
TTCCTCATTGTCGCGACCTTTATTGGATGTAAATACTTTCTCTCGGTACCGGAAAGTGACTTGCTAAAAAGAATGGGAGC
ATTGCAACGTGTGGTTGTGACGCCACCCGTTGCCGCACCAAAACTTCGACTGTCTATTTTATTAAAAGATGAGATAGCGA
AGCAGTTAGTCAGTGTTGATGAAACGAGCAACAACAGCAAAGTCATCTTTAAAGGCGACTCTATGTTTATGGTCGGCTCG
GATAACGTCAGACCTGAAATGATTGACGTAATTAAACGCGTCGCGCAGGAAGTGCATCGCGTTAAAGGGGCAATCCTCAT
CGTCGGGCATACAGACTCTATGCCGATTAATAAACCCGGCTTCCCTAATAACCAGGTACTTTCCGAAAAACGCGCGGCCA
ATGTTGCACGCTATATGGAGCAGGCCGGTATTCCAACCGACAAAATTCGGTTTGAGGGCAAGGGGGAAACGCAACCGGTT
AGCAGCAATGACGATGCGACAGGACGTTCGCAAAACCGCCGCGTAGAAATTTTTGTTAATTATTGA