Detailed information of effector
Summary
| Effector ID | EFF76644  |
| Effector type | Tse |
| Cognate immunity protein | IMU38217 |
| Related T6SS (Type) | T6SS01213 (Type i3) |
| Strain | Pseudomonas aeruginosa PAK |
| Replicon | chromosome |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | Y880_RS10940 (tse2) |
| Coordinates (Strand) | 2330486..2330962 (+) |
| NCBI ID | WP_003119469.1 |
| RefSeq | NZ_CP020659 |
| Uniprot ID | A0A1F0J6U9_9PSED, A0A6N0KLD0_9PSED, A0A0C7CS93_PSEAI, A0A3S4N6G8_PSEFL |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ADPRTs_Tse2 | PF18648.3 | 4.4e-61 | 7..152 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | MSYDYEKTSLTLYRAVFKANYDGDVGRYLRPDKELAEAAEVAPLLHPTFDSPNTPGVPARAPDIVAGRDGLYAPDTGGTSVFDRAGVLRRADGDFVIPDGTDIPPDLKVKQDSYNKRLQATHYTIMPAKPMYREVLMGQLDNFVRNAIRRQWEKARGL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9886 | - | - |
Protein sequence: 159 a.a. .
>EFF76644 NZ_CP020659:2330486-2330962 Type VI Secretion System Effector (Tse) [Pseudomonas aeruginosa PAK]
MSYDYEKTSLTLYRAVFKANYDGDVGRYLRPDKELAEAAEVAPLLHPTFDSPNTPGVPARAPDIVAGRDGLYAPDTGGTS
VFDRAGVLRRADGDFVIPDGTDIPPDLKVKQDSYNKRLQATHYTIMPAKPMYREVLMGQLDNFVRNAIRRQWEKARGL*
MSYDYEKTSLTLYRAVFKANYDGDVGRYLRPDKELAEAAEVAPLLHPTFDSPNTPGVPARAPDIVAGRDGLYAPDTGGTS
VFDRAGVLRRADGDFVIPDGTDIPPDLKVKQDSYNKRLQATHYTIMPAKPMYREVLMGQLDNFVRNAIRRQWEKARGL*
Nucleotide sequence: 477 bp .
>EFF76644 NZ_CP020659:2330486-2330962 Type VI Secretion System Effector (Tse) [Pseudomonas aeruginosa PAK]
ATGTCCTACGACTACGAGAAAACCAGCCTCACCCTCTACCGGGCGGTATTCAAGGCCAACTACGACGGCGACGTCGGTCG
CTACCTGCGTCCCGACAAGGAACTCGCCGAGGCTGCGGAAGTCGCCCCGCTGCTGCATCCGACCTTCGACAGCCCCAACA
CCCCTGGCGTCCCCGCCCGCGCGCCGGACATCGTCGCCGGCCGCGACGGCCTCTACGCCCCGGACACCGGCGGCACCTCG
GTGTTCGACCGCGCCGGCGTGCTGCGCCGCGCCGACGGCGACTTCGTGATACCCGACGGCACCGACATCCCGCCGGACCT
TAAGGTGAAACAGGACAGCTACAACAAGCGCCTGCAAGCCACCCACTACACCATCATGCCGGCCAAGCCGATGTACCGGG
AGGTCCTCATGGGCCAACTGGACAACTTCGTGCGCAACGCCATCCGCCGCCAATGGGAAAAAGCCCGCGGGCTCTAG
ATGTCCTACGACTACGAGAAAACCAGCCTCACCCTCTACCGGGCGGTATTCAAGGCCAACTACGACGGCGACGTCGGTCG
CTACCTGCGTCCCGACAAGGAACTCGCCGAGGCTGCGGAAGTCGCCCCGCTGCTGCATCCGACCTTCGACAGCCCCAACA
CCCCTGGCGTCCCCGCCCGCGCGCCGGACATCGTCGCCGGCCGCGACGGCCTCTACGCCCCGGACACCGGCGGCACCTCG
GTGTTCGACCGCGCCGGCGTGCTGCGCCGCGCCGACGGCGACTTCGTGATACCCGACGGCACCGACATCCCGCCGGACCT
TAAGGTGAAACAGGACAGCTACAACAAGCGCCTGCAAGCCACCCACTACACCATCATGCCGGCCAAGCCGATGTACCGGG
AGGTCCTCATGGGCCAACTGGACAACTTCGTGCGCAACGCCATCCGCCGCCAATGGGAAAAAGCCCGCGGGCTCTAG