Detailed information of effector


Summary

Effector ID EFF00140 experimental
Effector type Tae
Cognate immunity protein IMU00071 experimental
Related T6SS (Type) T6SS00115 experimental (Type i4b)
Strain Burkholderia thailandensis E264
Replicon chromosome
Sequence Protein sequence (147 a.a.); Nucleotide sequence (441 bp)
Description Tae2; amidase
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) BTH_I0068 (Tae2)
Coordinates (Strand) 73967..74407 (+)
NCBI ID 83720828
RefSeq NC_007651
Uniprot ID UPI0000668460
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
No matching records found
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-146MPYVSTHYSNNAGAPVGRWTCAPTSKLAPFDKAPTGSVTSGVDLCGQCVSYVKRVCPTLPLTGQWRKGAPVKGNATIVAGTVIATFNAAGKYDGHAAIYVSQTKDGGILVYDQFVTPPTPQPVQQRRLRWGAHGRSNNGDNFYVVE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.8104--


  Protein sequence: 147 a.a.    .

>EFF00140 NC_007651:73967-74407 Type VI Amidase Effector (Tae) [Burkholderia thailandensis E264]
MPYVSTHYSNNAGAPVGRWTCAPTSKLAPFDKAPTGSVTSGVDLCGQCVSYVKRVCPTLPLTGQWRKGAPVKGNATIVAG
TVIATFNAAGKYDGHAAIYVSQTKDGGILVYDQFVTPPTPQPVQQRRLRWGAHGRSNNGDNFYVVE*

  Nucleotide sequence: 441 bp    .

>EFF00140 NC_007651:73967-74407 Type VI Amidase Effector (Tae) [Burkholderia thailandensis E264]
ATGCCTTACGTGTCGACTCATTACTCGAACAACGCCGGCGCGCCGGTCGGCCGCTGGACCTGCGCGCCGACTTCGAAGCT
CGCGCCTTTCGACAAGGCGCCGACGGGCAGCGTCACGTCCGGCGTCGATCTGTGCGGCCAATGCGTGTCCTACGTGAAAC
GGGTCTGCCCGACGCTGCCGCTCACCGGGCAATGGCGCAAGGGCGCGCCGGTGAAAGGCAACGCGACGATCGTCGCGGGC
ACCGTGATCGCGACGTTCAACGCCGCCGGCAAGTACGACGGCCATGCGGCGATCTACGTCAGCCAGACGAAGGACGGCGG
CATCCTGGTGTACGACCAGTTCGTGACGCCGCCGACGCCGCAGCCGGTGCAGCAACGGCGCCTGCGCTGGGGCGCGCATG
GCCGGTCGAACAATGGGGACAACTTCTATGTCGTGGAGTAA