Detailed information NTG0998077

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABDZ23_RS02150
• Genome accession: NZ_CP155621
• Coordinates: 520710..521822 (-)
• Length: 370 a.a.
• NCBI ID: WP_247269194.1
• Uniprot ID: -
• Organism: Pseudomonas koreensis strain BM06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 515710..526822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDZ23_RS02140 (ABDZ23_02140)	hbdH	516967..517740 (+)	774	WP_047294787.1	3-hydroxybutyrate dehydrogenase	-
ABDZ23_RS02145 (ABDZ23_02145)	-	517880..519835 (+)	1956	WP_346833915.1	acetoacetate--CoA ligase	-
ABDZ23_RS02150 (ABDZ23_02150)	pilU	520710..521822 (-)	1113	WP_247269194.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ABDZ23_RS02155 (ABDZ23_02155)	-	521956..524505 (+)	2550	WP_247269193.1	PAS domain-containing sensor histidine kinase	-
ABDZ23_RS02160 (ABDZ23_02160)	-	524545..524820 (+)	276	WP_003225447.1	peptidylprolyl isomerase	-
ABDZ23_RS02165 (ABDZ23_02165)	-	524937..525869 (-)	933	WP_346833916.1	sugar kinase	-
ABDZ23_RS02170 (ABDZ23_02170)	-	526025..526321 (+)	297	WP_007969000.1	transposase	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 41112.93 Da
• Isoelectric Point: 6.6254

>NTDB_id=998077 ABDZ23_RS02150 WP_247269194.1 520710..521822(-) (pilU) [Pseudomonas koreensis strain BM06]
MEIDALLLRLSSQHGSDLFLSTGAPPSARIDGVLTPFSERPFKPGEVETIANSLMDAEQRREFDRDLEMNLAISRTGIGR
FRVNVFKQRNDVSIVIRNVKLDIPRFEDLKLPPVLLETVMLKQGLILFVGATDSGKSTSLAALIDHRNRHSSGHIITIED
PVEYIHRHQRSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALTFADTGHLVLSTLHAHNANQALDRI
VNLFPEERRPQLLHALGNNLKAFVSQRLVRTLDGQRRAAVEVMLGTPTIADLIRRNELGELKGIMEKSGEVGMQTFDAAL
YGLVVEGVISEDEALKHADSQNNLRLRLKLHAEAGPAPAPSSSGDWGLMD

Nucleotide

• Length: 1113 bp

>NTDB_id=998077 ABDZ23_RS02150 WP_247269194.1 520710..521822(-) (pilU) [Pseudomonas koreensis strain BM06]
ATGGAAATCGATGCACTGTTGCTCCGTCTGTCGAGCCAGCACGGCTCTGACCTGTTCCTGTCCACGGGAGCACCACCCAG
TGCGCGCATCGATGGCGTGCTGACGCCGTTCAGCGAGCGGCCGTTCAAGCCCGGTGAGGTCGAGACTATCGCCAACTCCC
TGATGGACGCCGAGCAACGACGCGAGTTCGATCGGGATCTGGAAATGAACCTGGCGATTTCCCGTACGGGCATCGGGCGT
TTTCGGGTGAACGTCTTCAAGCAACGCAATGATGTGTCAATCGTGATCCGCAACGTCAAACTCGATATTCCGCGCTTCGA
AGACCTGAAACTGCCGCCGGTATTGCTGGAAACGGTGATGCTCAAACAGGGGCTGATCCTGTTCGTTGGCGCCACCGACT
CCGGTAAATCCACCTCGCTGGCCGCGCTGATCGATCACCGCAATCGCCACAGCAGCGGGCACATCATCACCATCGAAGAC
CCGGTGGAGTATATCCATCGACACCAGCGCTCGATCATCAATCAACGCGAAGTCGGCGTCGATACCCGCAGTTTCCATGC
GGCGCTGAAAAACACCCTGCGTCAGGCCCCGGATGTGGTGCTGATCGGCGAGATCCGCGACCGCGAAACCATGGAGCATG
CGCTGACATTTGCCGATACCGGGCACCTCGTGCTGTCGACGCTGCATGCGCACAACGCCAATCAGGCGCTGGACCGTATC
GTCAATCTGTTCCCCGAAGAGCGCCGCCCGCAGTTGCTGCACGCGCTGGGCAACAATCTCAAAGCGTTCGTCTCGCAACG
GCTGGTGCGCACTTTGGACGGTCAGCGCCGGGCGGCGGTCGAAGTGATGCTCGGCACCCCGACCATCGCCGACCTGATCC
GGCGCAACGAGTTGGGTGAACTCAAGGGCATCATGGAGAAGTCTGGCGAGGTCGGCATGCAGACCTTCGACGCGGCGCTG
TACGGGCTGGTGGTGGAGGGCGTGATCAGTGAGGACGAAGCGCTCAAACATGCCGATTCGCAGAACAATCTGCGGCTGCG
TTTGAAGCTGCATGCCGAGGCGGGGCCAGCGCCCGCGCCCTCATCATCAGGCGACTGGGGCCTGATGGATTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (69-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.62	95.946	0.543
pilU	Acinetobacter baylyi ADP1	53.221	96.486	0.514
pilU	Vibrio cholerae strain A1552	52.857	94.595	0.5
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.005	100	0.403
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	39.595	93.514	0.37
pilT	Vibrio cholerae strain A1552	39.595	93.514	0.37
pilT	Pseudomonas stutzeri DSM 10701	39.535	92.973	0.368
pilT	Pseudomonas aeruginosa PAK	39.244	92.973	0.365