Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSS89_RS08920 Genome accession   NZ_CP155471
Coordinates   1818138..1819373 (+) Length   411 a.a.
NCBI ID   WP_346207258.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-2831     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1813138..1824373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS89_RS08895 (NSS89_08895) - 1814103..1814834 (+) 732 WP_346207256.1 SDR family oxidoreductase -
  NSS89_RS08900 (NSS89_08900) - 1815075..1815332 (+) 258 WP_034769894.1 DUF3243 domain-containing protein -
  NSS89_RS08905 (NSS89_08905) - 1815663..1816454 (+) 792 WP_328186718.1 DUF3388 domain-containing protein -
  NSS89_RS08910 (NSS89_08910) - 1816472..1817368 (+) 897 WP_346207257.1 RodZ domain-containing protein -
  NSS89_RS08915 (NSS89_08915) pgsA 1817486..1818064 (+) 579 WP_034769896.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSS89_RS08920 (NSS89_08920) cinA 1818138..1819373 (+) 1236 WP_346207258.1 competence/damage-inducible protein A Machinery gene
  NSS89_RS08925 (NSS89_08925) - 1819572..1819820 (+) 249 WP_041903281.1 hypothetical protein -
  NSS89_RS08930 (NSS89_08930) - 1819868..1820218 (+) 351 WP_034769902.1 hypothetical protein -
  NSS89_RS08935 (NSS89_08935) - 1820356..1820802 (+) 447 WP_034769958.1 YaiI/YqxD family protein -
  NSS89_RS08940 (NSS89_08940) - 1820903..1821025 (-) 123 WP_346207259.1 hypothetical protein -
  NSS89_RS08945 (NSS89_08945) - 1821101..1822015 (-) 915 WP_346207260.1 CAP domain-containing protein -
  NSS89_RS08950 (NSS89_08950) - 1822488..1822589 (+) 102 WP_082026100.1 putative holin-like toxin -
  NSS89_RS08955 (NSS89_08955) - 1823035..1823205 (+) 171 WP_231553317.1 metal-sensing transcriptional repressor -
  NSS89_RS08960 (NSS89_08960) - 1823265..1823772 (+) 508 Protein_1725 glycogen/starch/alpha-glucan phosphorylase -
  NSS89_RS08965 (NSS89_08965) - 1823968..1824228 (+) 261 WP_034769908.1 transcriptional regulator SplA domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45233.78 Da        Isoelectric Point: 5.2271

>NTDB_id=996797 NSS89_RS08920 WP_346207258.1 1818138..1819373(+) (cinA) [Caldifermentibacillus hisashii strain FSL K6-2831]
MNGEIIAVGSELLLGQIANTNAKFISQQLAGIGVNVFYHTVVGDNAERLKRAVEIAESRSNLIIFTGGLGPTKDDLTKET
IANHLGVKLVHNEAALGSIEEFFRKRNVTMTPNNRKQALVFEHAEVLPNDTGMAPGMVLTKNEITYMLLPGPPSEMEPMF
SNYGMKAILNRLESIDRIESRVLRFFGIGESTLEHTLEDFIDQQTNPTIAPLASDGEVTLRLTAKHPSDLERRRLLDETE
AKIMERVGEFFYGYDETTIIKEMGNLIESNNMTLSVAESLTGGLFQEEVTSIAGVSKWFKGGIVSYSPEIKINVLGVNQD
TVETYGVVSKECAMEMAKNVRKLMDTDIGISFTGVAGPASLEGKEPGSVYIGVSFKNKPTASHFVLLPGNRETVRVRAVK
TGAWYILKELR

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=996797 NSS89_RS08920 WP_346207258.1 1818138..1819373(+) (cinA) [Caldifermentibacillus hisashii strain FSL K6-2831]
TTGAATGGTGAAATTATTGCCGTAGGGTCCGAATTATTACTTGGCCAAATTGCTAATACGAATGCAAAATTTATTTCTCA
ACAATTGGCCGGTATTGGGGTAAATGTATTTTACCATACCGTTGTTGGGGATAATGCCGAGCGGTTGAAAAGAGCGGTGG
AAATTGCCGAAAGTCGTTCCAATTTAATTATTTTTACGGGTGGCTTAGGGCCTACAAAAGATGATTTAACAAAAGAAACC
ATTGCAAATCATCTGGGAGTAAAGCTTGTTCATAATGAAGCGGCTCTTGGCTCGATAGAAGAATTTTTTAGAAAACGGAA
TGTTACCATGACACCGAATAATCGGAAACAAGCACTTGTTTTTGAACATGCGGAGGTTTTGCCAAACGATACCGGAATGG
CACCGGGAATGGTGTTAACAAAAAATGAAATTACTTATATGCTACTTCCCGGTCCGCCTAGTGAAATGGAGCCGATGTTT
TCAAATTATGGGATGAAAGCAATCCTAAATCGGTTGGAATCCATTGATCGAATTGAATCTCGTGTGTTACGATTTTTTGG
TATTGGTGAATCAACTCTGGAACATACGCTGGAAGATTTCATTGATCAGCAGACAAACCCGACCATTGCCCCGCTCGCTT
CTGATGGCGAAGTGACATTGCGGCTTACAGCTAAACATCCCTCAGATCTTGAACGAAGAAGGTTACTGGATGAGACAGAA
GCAAAAATTATGGAGCGGGTGGGTGAATTTTTTTACGGATATGATGAAACAACGATTATCAAAGAAATGGGCAATTTGAT
TGAAAGCAACAACATGACACTTTCGGTAGCTGAAAGTTTAACGGGCGGACTGTTTCAGGAAGAAGTGACATCCATTGCCG
GTGTCAGCAAATGGTTTAAGGGCGGGATCGTATCGTATTCCCCTGAAATAAAAATAAATGTACTTGGCGTAAATCAGGAC
ACTGTTGAAACTTATGGTGTCGTCAGCAAAGAATGTGCGATGGAGATGGCAAAAAATGTCCGAAAATTGATGGACACTGA
TATCGGAATCAGCTTTACCGGTGTTGCCGGACCAGCCTCATTGGAAGGAAAAGAACCCGGTTCAGTATATATTGGTGTGT
CATTTAAGAATAAGCCTACCGCCAGTCATTTTGTCTTATTGCCGGGAAACAGAGAAACGGTTCGTGTCCGTGCCGTAAAA
ACCGGTGCATGGTATATATTAAAGGAACTTCGGTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-404)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.671

99.027

0.611
  cinA Streptococcus mutans UA159

45.926

98.54

0.453
  cinA Streptococcus pneumoniae TIGR4

48.042

93.187

0.448
  cinA Streptococcus mitis NCTC 12261

47.781

93.187

0.445
  cinA Streptococcus mitis SK321

47.781

93.187

0.445
  cinA Streptococcus pneumoniae Rx1

47.52

93.187

0.443
  cinA Streptococcus pneumoniae R6

47.52

93.187

0.443
  cinA Streptococcus pneumoniae D39

47.258

93.187

0.44
  cinA Streptococcus suis isolate S10

39.842

92.214

0.367

Multiple sequence alignment