Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSS91_RS09020 Genome accession   NZ_CP155466
Coordinates   1858960..1860195 (+) Length   411 a.a.
NCBI ID   WP_346207258.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0983     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1853960..1865195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS91_RS08995 (NSS91_08995) - 1854993..1855724 (+) 732 WP_346208446.1 SDR family oxidoreductase -
  NSS91_RS09000 (NSS91_09000) - 1855895..1856152 (+) 258 WP_034769894.1 DUF3243 domain-containing protein -
  NSS91_RS09005 (NSS91_09005) - 1856486..1857277 (+) 792 WP_095141166.1 DUF3388 domain-containing protein -
  NSS91_RS09010 (NSS91_09010) - 1857295..1858191 (+) 897 WP_041903276.1 RodZ domain-containing protein -
  NSS91_RS09015 (NSS91_09015) pgsA 1858309..1858887 (+) 579 WP_041903278.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSS91_RS09020 (NSS91_09020) cinA 1858960..1860195 (+) 1236 WP_346207258.1 competence/damage-inducible protein A Machinery gene
  NSS91_RS09025 (NSS91_09025) - 1860386..1860643 (+) 258 WP_346208447.1 hypothetical protein -
  NSS91_RS09030 (NSS91_09030) - 1860900..1861343 (+) 444 WP_346208448.1 YaiI/YqxD family protein -
  NSS91_RS09035 (NSS91_09035) - 1861478..1861615 (+) 138 WP_343127709.1 hypothetical protein -
  NSS91_RS09040 (NSS91_09040) - 1861648..1861965 (-) 318 WP_346208449.1 CAP domain-containing protein -
  NSS91_RS09045 (NSS91_09045) - 1861935..1862561 (-) 627 WP_346208450.1 hypothetical protein -
  NSS91_RS09050 (NSS91_09050) - 1863034..1863135 (+) 102 WP_268756472.1 putative holin-like toxin -
  NSS91_RS09055 (NSS91_09055) - 1863635..1863751 (+) 117 WP_326929277.1 hypothetical protein -
  NSS91_RS09060 (NSS91_09060) - 1863811..1864287 (+) 477 Protein_1746 glycogen/starch/alpha-glucan phosphorylase -
  NSS91_RS09065 (NSS91_09065) - 1864513..1864773 (+) 261 WP_095141871.1 transcriptional regulator SplA domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45233.78 Da        Isoelectric Point: 5.2271

>NTDB_id=996576 NSS91_RS09020 WP_346207258.1 1858960..1860195(+) (cinA) [Caldifermentibacillus hisashii strain FSL W8-0983]
MNGEIIAVGSELLLGQIANTNAKFISQQLAGIGVNVFYHTVVGDNAERLKRAVEIAESRSNLIIFTGGLGPTKDDLTKET
IANHLGVKLVHNEAALGSIEEFFRKRNVTMTPNNRKQALVFEHAEVLPNDTGMAPGMVLTKNEITYMLLPGPPSEMEPMF
SNYGMKAILNRLESIDRIESRVLRFFGIGESTLEHTLEDFIDQQTNPTIAPLASDGEVTLRLTAKHPSDLERRRLLDETE
AKIMERVGEFFYGYDETTIIKEMGNLIESNNMTLSVAESLTGGLFQEEVTSIAGVSKWFKGGIVSYSPEIKINVLGVNQD
TVETYGVVSKECAMEMAKNVRKLMDTDIGISFTGVAGPASLEGKEPGSVYIGVSFKNKPTASHFVLLPGNRETVRVRAVK
TGAWYILKELR

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=996576 NSS91_RS09020 WP_346207258.1 1858960..1860195(+) (cinA) [Caldifermentibacillus hisashii strain FSL W8-0983]
TTGAATGGTGAAATTATTGCAGTTGGGTCCGAATTATTACTTGGCCAAATTGCTAATACGAATGCAAAATTTATTTCTCA
ACAATTGGCCGGTATTGGGGTAAATGTATTTTACCATACCGTTGTTGGGGATAATGCCGAGCGGTTGAAAAGAGCGGTGG
AAATTGCCGAAAGTCGTTCCAATTTAATTATTTTTACGGGTGGCTTAGGGCCTACAAAAGATGATTTAACAAAAGAAACC
ATTGCAAATCATCTGGGAGTAAAGCTTGTTCATAATGAAGCGGCTCTTGGCTCGATAGAAGAATTTTTTAGAAAACGGAA
TGTTACCATGACACCGAATAATCGGAAACAAGCACTTGTTTTTGAACATGCGGAGGTTTTGCCAAACGATACCGGAATGG
CACCGGGAATGGTGTTAACAAAAAATGAAATTACTTATATGCTACTTCCCGGTCCGCCTAGTGAAATGGAGCCGATGTTT
TCAAATTATGGGATGAAAGCAATCCTAAATCGGTTGGAATCCATTGATCGAATTGAATCTCGTGTGTTACGATTTTTTGG
TATTGGTGAATCAACTCTGGAACATACGCTGGAAGATTTCATTGATCAGCAGACAAACCCGACCATTGCCCCGCTCGCTT
CTGATGGCGAAGTGACATTGCGGCTTACAGCTAAACATCCCTCAGATCTTGAACGAAGAAGGTTACTGGATGAGACAGAA
GCAAAAATTATGGAGCGGGTGGGTGAATTTTTTTACGGATATGATGAAACAACGATTATCAAAGAAATGGGCAATTTGAT
TGAAAGCAACAACATGACACTTTCGGTAGCTGAAAGTTTAACGGGCGGACTGTTTCAGGAAGAAGTGACATCCATTGCCG
GTGTCAGCAAATGGTTTAAGGGCGGGATCGTATCGTATTCCCCTGAAATAAAAATAAATGTACTTGGCGTAAATCAGGAC
ACTGTTGAAACTTATGGTGTCGTCAGCAAAGAATGTGCGATGGAGATGGCAAAAAATGTCCGAAAATTGATGGACACTGA
TATCGGAATCAGCTTTACCGGTGTTGCCGGACCAGCCTCATTGGAAGGAAAAGAACCCGGTTCAGTATATATTGGTGTGT
CATTTAAGAATAAGCCTACCGCCAGTCATTTTGTCTTATTGCCGGGAAACAGAGAAACGGTTCGTGTCCGTGCCGTAAAA
ACCGGTGCATGGTATATATTAAAGGAACTTCGGTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-404)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.671

99.027

0.611
  cinA Streptococcus mutans UA159

45.926

98.54

0.453
  cinA Streptococcus pneumoniae TIGR4

48.042

93.187

0.448
  cinA Streptococcus mitis NCTC 12261

47.781

93.187

0.445
  cinA Streptococcus mitis SK321

47.781

93.187

0.445
  cinA Streptococcus pneumoniae Rx1

47.52

93.187

0.443
  cinA Streptococcus pneumoniae R6

47.52

93.187

0.443
  cinA Streptococcus pneumoniae D39

47.258

93.187

0.44
  cinA Streptococcus suis isolate S10

39.842

92.214

0.367

Multiple sequence alignment