Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V8Y39_RS02275 Genome accession   NZ_CP155444
Coordinates   477414..478655 (+) Length   413 a.a.
NCBI ID   WP_002343122.1    Uniprot ID   -
Organism   Enterococcus faecium strain NPLps07     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472414..483655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8Y39_RS02255 (V8Y39_02255) yfmF 472494..473762 (+) 1269 WP_002293085.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  V8Y39_RS02260 (V8Y39_02260) yfmH 473755..475041 (+) 1287 WP_002293084.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  V8Y39_RS02265 (V8Y39_02265) - 475533..476456 (+) 924 WP_002310444.1 RodZ domain-containing protein -
  V8Y39_RS02270 (V8Y39_02270) pgsA 476665..477243 (+) 579 WP_002293081.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V8Y39_RS02275 (V8Y39_02275) cinA 477414..478655 (+) 1242 WP_002343122.1 competence/damage-inducible protein A Machinery gene
  V8Y39_RS02280 (V8Y39_02280) recA 478764..479813 (+) 1050 WP_002293077.1 recombinase RecA Machinery gene
  V8Y39_RS02285 (V8Y39_02285) rny 480233..481789 (+) 1557 WP_002287336.1 ribonuclease Y -
  V8Y39_RS02290 (V8Y39_02290) proC 481868..482674 (-) 807 WP_002293075.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45378.89 Da        Isoelectric Point: 4.8009

>NTDB_id=996345 V8Y39_RS02275 WP_002343122.1 477414..478655(+) (cinA) [Enterococcus faecium strain NPLps07]
MKAEIIAVGTELLLGQVVNTNATFLSEQLADLGIEVYYQTVVGDNQQRLEELIALAETRSELILLCGGLGPTEDDLTKEA
TAAHLGKSLIQNTEGYKKLLAYFETTHRKMTKNNLQQSQIIEGGVPLPNRTGLALGTFYQTDTHAYILLPGPPNELKPMF
VEQVRPLLEERFPSEEKLISKVLRFYGIGESRLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDVQAGNQALLALE
EKIQERVGEYFYGYGDDNSLAKVVVELLKANKQTVTAAESLTAGAFQAALGDIAGVSDVFPGGFVTYSLQTKAGFLEIDP
ELLAEYGTVSKECVEQMAIQAREIARTDYSVAFTGVAGPDMLEGHPAGTVWIAISSKDGVVSEKYHFARDRAAIRYNAVM
QGFDLLRKQLLKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=996345 V8Y39_RS02275 WP_002343122.1 477414..478655(+) (cinA) [Enterococcus faecium strain NPLps07]
ATGAAAGCAGAAATAATAGCTGTCGGAACAGAACTTTTACTAGGACAAGTCGTGAATACGAATGCCACTTTCTTGTCAGA
ACAGCTAGCTGATCTAGGTATCGAAGTTTATTATCAGACAGTCGTAGGAGATAATCAGCAGCGTTTAGAAGAGTTGATTG
CTCTAGCTGAAACAAGAAGTGAACTCATACTCTTATGTGGCGGATTAGGGCCGACAGAAGATGATCTGACAAAAGAAGCA
ACTGCGGCTCACCTCGGTAAGTCTCTCATACAAAATACGGAAGGATACAAAAAATTATTGGCATATTTTGAAACAACCCA
TCGAAAAATGACCAAAAACAATCTGCAACAGTCTCAAATCATCGAAGGCGGGGTTCCTCTACCAAATCGTACAGGGCTTG
CTTTAGGGACTTTTTATCAAACAGATACACATGCATATATCCTTCTTCCCGGTCCGCCTAATGAGTTGAAACCAATGTTT
GTGGAACAAGTACGTCCTTTACTAGAGGAACGTTTTCCTTCTGAAGAAAAACTGATTTCTAAAGTTTTGCGCTTTTATGG
GATTGGTGAATCGCGACTGGTCACTGAACTAAAAGATCTGATTGAGACACAGATCAATCCAACGATCGCTCCTTATGCCA
AACCAAATGAAGTGACATTGCGTCTAACAGTGAAAACAAAGGATGTTCAGGCAGGAAATCAAGCTCTTTTAGCATTGGAA
GAAAAGATTCAAGAACGAGTAGGAGAATATTTTTATGGATATGGCGATGATAATTCGTTAGCAAAAGTCGTAGTGGAACT
GCTGAAAGCAAACAAGCAGACTGTAACAGCGGCGGAAAGCTTGACAGCCGGTGCCTTCCAAGCCGCATTGGGCGATATTG
CTGGTGTATCTGATGTATTTCCAGGCGGCTTCGTTACCTACTCGCTCCAAACAAAAGCTGGTTTTCTGGAGATTGATCCG
GAGCTATTAGCAGAATATGGAACAGTCAGCAAAGAATGTGTGGAGCAGATGGCCATTCAAGCACGTGAGATAGCAAGAAC
AGATTACAGTGTAGCTTTCACCGGAGTGGCTGGACCGGACATGTTAGAAGGTCACCCTGCAGGAACAGTATGGATCGCTA
TTTCATCTAAAGATGGCGTGGTTTCAGAAAAATATCATTTTGCCAGAGACCGTGCGGCTATCAGATATAATGCGGTTATG
CAAGGATTTGATCTTTTGAGAAAACAGCTTTTAAAAAAATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.667

100

0.525
  cinA Streptococcus pneumoniae TIGR4

51.429

100

0.523
  cinA Streptococcus mitis NCTC 12261

51.19

100

0.521
  cinA Streptococcus pneumoniae Rx1

51.19

100

0.521
  cinA Streptococcus pneumoniae R6

51.19

100

0.521
  cinA Streptococcus pneumoniae D39

51.19

100

0.521
  cinA Streptococcus mutans UA159

51.566

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

47.573

99.758

0.475
  cinA Streptococcus suis isolate S10

41.546

100

0.416

Multiple sequence alignment