Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAVB50_RS14570 Genome accession   NZ_CP154923
Coordinates   2721676..2722926 (-) Length   416 a.a.
NCBI ID   WP_345806343.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2716676..2727926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS14555 (AAVB50_14550) rny 2717276..2718838 (-) 1563 WP_003221010.1 ribonuclease Y -
  AAVB50_RS14560 (AAVB50_14555) pbpX 2719114..2720289 (-) 1176 WP_038428981.1 serine hydrolase domain-containing protein -
  AAVB50_RS14565 (AAVB50_14560) recA 2720457..2721503 (-) 1047 WP_003245789.1 recombinase RecA Machinery gene
  AAVB50_RS14570 (AAVB50_14565) cinA 2721676..2722926 (-) 1251 WP_345806343.1 competence/damage-inducible protein A Machinery gene
  AAVB50_RS14575 (AAVB50_14570) pgsA 2722944..2723525 (-) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAVB50_RS14580 (AAVB50_14575) rodZ 2723575..2724441 (-) 867 WP_010886511.1 cell shape determination protein RodZ -
  AAVB50_RS14585 (AAVB50_14580) - 2724508..2725299 (-) 792 WP_003220998.1 YmfK family protein -
  AAVB50_RS14590 (AAVB50_14585) ymfJ 2725429..2725686 (-) 258 WP_003245199.1 DUF3243 domain-containing protein -
  AAVB50_RS14595 (AAVB50_14590) efpI 2725767..2726495 (-) 729 WP_173614091.1 EF-P-5 aminopentanone reductase -
  AAVB50_RS14600 (AAVB50_14595) ymfH 2726550..2727836 (-) 1287 WP_345806344.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45593.92 Da        Isoelectric Point: 5.5173

>NTDB_id=995545 AAVB50_RS14570 WP_345806343.1 2721676..2722926(-) (cinA) [Bacillus subtilis strain FUA2233]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKRVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACREKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVICYTNDVKQNVLG
VKKDTLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=995545 AAVB50_RS14570 WP_345806343.1 2721676..2722926(-) (cinA) [Bacillus subtilis strain FUA2233]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCGGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACTGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTTGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAGGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTATTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGACACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGTGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAACGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.038

100

0.99
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus mitis SK321

45.215

100

0.454
  cinA Streptococcus mitis NCTC 12261

45.215

100

0.454
  cinA Streptococcus pneumoniae TIGR4

44.976

100

0.452
  cinA Streptococcus pneumoniae Rx1

44.737

100

0.45
  cinA Streptococcus pneumoniae R6

44.737

100

0.45
  cinA Streptococcus pneumoniae D39

44.498

100

0.447
  cinA Streptococcus suis isolate S10

41.114

90.625

0.373

Multiple sequence alignment