Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAVC46_RS03960 Genome accession   NZ_CP154913
Coordinates   768205..769455 (+) Length   416 a.a.
NCBI ID   WP_345821460.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2119     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 763205..774455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS03935 (AAVC46_03935) - 764614..765342 (+) 729 WP_334749172.1 SDR family oxidoreductase -
  AAVC46_RS03940 (AAVC46_03940) - 765416..765673 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  AAVC46_RS03945 (AAVC46_03945) - 765805..766596 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  AAVC46_RS03950 (AAVC46_03950) - 766620..767531 (+) 912 WP_345821458.1 helix-turn-helix domain-containing protein -
  AAVC46_RS03955 (AAVC46_03955) pgsA 767607..768188 (+) 582 WP_034662216.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAVC46_RS03960 (AAVC46_03960) cinA 768205..769455 (+) 1251 WP_345821460.1 competence/damage-inducible protein A Machinery gene
  AAVC46_RS03965 (AAVC46_03965) recA 769632..770672 (+) 1041 WP_034662211.1 recombinase RecA Machinery gene
  AAVC46_RS03970 (AAVC46_03970) rny 771172..772734 (+) 1563 WP_003211958.1 ribonuclease Y -
  AAVC46_RS03975 (AAVC46_03975) - 772823..773617 (+) 795 WP_034662209.1 TIGR00282 family metallophosphoesterase -
  AAVC46_RS03980 (AAVC46_03980) spoVS 773819..774079 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45585.67 Da        Isoelectric Point: 4.9838

>NTDB_id=995300 AAVC46_RS03960 WP_345821460.1 768205..769455(+) (cinA) [Bacillus pumilus strain FUA2119]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYDDTSLVREASKALHAHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGARKLAGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=995300 AAVC46_RS03960 WP_345821460.1 768205..769455(+) (cinA) [Bacillus pumilus strain FUA2119]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGGTCCGAACTTTTGCTAGGACAAATTACGAATACGAATGCACA
ATTTATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGACTACTT
TCGAAAGACTGGACGAGACATGTCGCCGAATAACCGTAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTAAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGAAGACGATACATTTTATATGTTGCTTCCTGGACCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCGAAGCCGCTGATTTCTGAGAAACTGGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
CCGCTTCTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACAGAAGCGAAAATTTTAGCGCGGGTAGGTGAGTACTTCTACGGGTATGATGATACATCACTTGTCCGTGAAGC
TTCCAAGGCCTTGCACGCACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACTGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTGTCGTTTGTTATACAAATCAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAGGAAACGTTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTCTAGAGCTTGCTGAAGGTGCTAGAAAGCT
CGCGGGAAGTGATATTGGCATTAGTTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCTGTCGGAAAAGTGT
TCATTGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATACGGTCTGCATCACTTGCTCAATTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mitis SK321

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.268

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.268

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.031

100

0.476
  cinA Streptococcus pneumoniae R6

47.031

100

0.476
  cinA Streptococcus mutans UA159

47.596

100

0.476
  cinA Streptococcus pneumoniae D39

46.793

100

0.474
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment