Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAYR27_RS14980 Genome accession   NZ_CP154912
Coordinates   2908735..2909985 (-) Length   416 a.a.
NCBI ID   WP_041117442.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2118     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2903735..2914985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS14960 (AAYR27_14960) spoVS 2904295..2904555 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  AAYR27_RS14965 (AAYR27_14965) - 2904758..2905552 (-) 795 WP_024424109.1 TIGR00282 family metallophosphoesterase -
  AAYR27_RS14970 (AAYR27_14970) rny 2905643..2907205 (-) 1563 WP_003211958.1 ribonuclease Y -
  AAYR27_RS14975 (AAYR27_14975) recA 2907514..2908557 (-) 1044 WP_034281901.1 recombinase RecA Machinery gene
  AAYR27_RS14980 (AAYR27_14980) cinA 2908735..2909985 (-) 1251 WP_041117442.1 competence/damage-inducible protein A Machinery gene
  AAYR27_RS14985 (AAYR27_14985) pgsA 2910002..2910583 (-) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAYR27_RS14990 (AAYR27_14990) - 2910657..2911556 (-) 900 WP_034281897.1 helix-turn-helix domain-containing protein -
  AAYR27_RS14995 (AAYR27_14995) - 2911580..2912371 (-) 792 WP_003211480.1 DUF3388 domain-containing protein -
  AAYR27_RS15000 (AAYR27_15000) - 2912503..2912760 (-) 258 WP_041109118.1 DUF3243 domain-containing protein -
  AAYR27_RS15005 (AAYR27_15005) - 2912834..2913565 (-) 732 WP_101677176.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45537.61 Da        Isoelectric Point: 4.7414

>NTDB_id=995259 AAYR27_RS14980 WP_041117442.1 2908735..2909985(-) (cinA) [Bacillus safensis strain FUA2118]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASSLGKELVLNEEAFESIQDYFLKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=995259 AAYR27_RS14980 WP_041117442.1 2908735..2909985(-) (cinA) [Bacillus safensis strain FUA2118]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGCTCGCTTGGGAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCTAAAGACCGGACGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGGTCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCGGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAGCTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGACGCTCAAACGAATCCGACAATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTGGCGCGGGTAGGTGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
ATCCAAAGCCTTGCACGAGCACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTGCTTGGC
TGCCGGGAGGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGAGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGGCCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus pneumoniae TIGR4

47.981

100

0.486
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.743

100

0.483
  cinA Streptococcus pneumoniae R6

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae D39

47.506

100

0.481
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394

Multiple sequence alignment