Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAYR27_RS13120 Genome accession   NZ_CP154912
Coordinates   2539625..2540260 (-) Length   211 a.a.
NCBI ID   WP_034280474.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2118     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2534625..2545260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS13100 (AAYR27_13100) - 2534965..2535669 (+) 705 WP_101676916.1 DnaD domain-containing protein -
  AAYR27_RS13105 (AAYR27_13105) nth 2535687..2536349 (+) 663 WP_034280464.1 endonuclease III -
  AAYR27_RS13110 (AAYR27_13110) - 2536346..2536855 (+) 510 WP_046311577.1 YpoC family protein -
  AAYR27_RS13115 (AAYR27_13115) - 2536892..2539605 (-) 2714 Protein_2518 PBP1A family penicillin-binding protein -
  AAYR27_RS13120 (AAYR27_13120) recU 2539625..2540260 (-) 636 WP_034280474.1 Holliday junction resolvase RecU Machinery gene
  AAYR27_RS13125 (AAYR27_13125) - 2540307..2541263 (+) 957 WP_101676918.1 DUF2515 domain-containing protein -
  AAYR27_RS13130 (AAYR27_13130) sspM 2541287..2541391 (-) 105 WP_024422772.1 acid-soluble spore protein SspM -
  AAYR27_RS13135 (AAYR27_13135) - 2541586..2541822 (+) 237 WP_024428114.1 DUF5446 family protein -
  AAYR27_RS13140 (AAYR27_13140) - 2541872..2542252 (+) 381 WP_224426683.1 YppE family protein -
  AAYR27_RS13145 (AAYR27_13145) - 2542361..2542822 (+) 462 WP_061109277.1 YppG family protein -
  AAYR27_RS13150 (AAYR27_13150) - 2542843..2543262 (-) 420 WP_034280483.1 Hsp20/alpha crystallin family protein -
  AAYR27_RS13155 (AAYR27_13155) - 2543432..2543938 (+) 507 WP_034280784.1 PTS glucose transporter subunit IIA -
  AAYR27_RS13160 (AAYR27_13160) - 2543996..2545114 (-) 1119 WP_251027221.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.71 Da        Isoelectric Point: 9.8310

>NTDB_id=995256 AAYR27_RS13120 WP_034280474.1 2539625..2540260(-) (recU) [Bacillus safensis strain FUA2118]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=995256 AAYR27_RS13120 WP_034280474.1 2539625..2540260(-) (recU) [Bacillus safensis strain FUA2118]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATACAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACAAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTTTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAA
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701

Multiple sequence alignment