Detailed information NTG0995119

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: AAVD42_RS09210
• Genome accession: NZ_CP154908
• Coordinates: 1549921..1550607 (-)
• Length: 228 a.a.
• NCBI ID: WP_345808232.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain FUA2116
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1544921..1555607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVD42_RS09175 (AAVD42_09175)	fliW	1545054..1545488 (-)	435	WP_034660142.1	flagellar assembly protein FliW	-
AAVD42_RS09180 (AAVD42_09180)	-	1545517..1546095 (-)	579	WP_345808230.1	DUF6470 family protein	-
AAVD42_RS09185 (AAVD42_09185)	flgL	1546144..1547055 (-)	912	WP_034660144.1	flagellar hook-associated protein FlgL	-
AAVD42_RS09190 (AAVD42_09190)	flgK	1547065..1548585 (-)	1521	WP_345808231.1	flagellar hook-associated protein FlgK	-
AAVD42_RS09195 (AAVD42_09195)	-	1548601..1549083 (-)	483	WP_003213076.1	flagellar protein FlgN	-
AAVD42_RS09200 (AAVD42_09200)	flgM	1549102..1549365 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
AAVD42_RS09205 (AAVD42_09205)	-	1549445..1549864 (-)	420	WP_003212865.1	TIGR03826 family flagellar region protein	-
AAVD42_RS09210 (AAVD42_09210)	comFC	1549921..1550607 (-)	687	WP_345808232.1	ComF family protein	Machinery gene
AAVD42_RS09215 (AAVD42_09215)	-	1550604..1550897 (-)	294	WP_106066158.1	late competence development ComFB family protein	-
AAVD42_RS09220 (AAVD42_09220)	comFA	1550964..1552343 (-)	1380	WP_345808233.1	DEAD/DEAH box helicase	Machinery gene
AAVD42_RS09225 (AAVD42_09225)	-	1552463..1553305 (-)	843	WP_113768803.1	DegV family protein	-
AAVD42_RS09230 (AAVD42_09230)	degU	1553523..1554212 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
AAVD42_RS09235 (AAVD42_09235)	degS	1554277..1555452 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25914.28 Da
• Isoelectric Point: 9.6118

>NTDB_id=995119 AAVD42_RS09210 WP_345808232.1 1549921..1550607(-) (comFC) [Bacillus pumilus strain FUA2116]
MICLICEGHFVASFTWKSLLLLNDDRLCIACKHYLEKIQGPICPACGRAQSNDQLCQDCSRWKERADSTTLLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGEPILQPLVKIH
QTKQSKKKKNERLDQKGMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=995119 AAVD42_RS09210 WP_345808232.1 1549921..1550607(-) (comFC) [Bacillus pumilus strain FUA2116]
TTGATCTGCCTCATTTGTGAGGGGCATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCGTCT
ATGTATAGCATGTAAGCATTACCTAGAAAAAATTCAAGGCCCGATTTGTCCAGCCTGCGGGAGAGCACAGTCGAACGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCGCTGATTCTACTACATTACTTGTGAAAAATAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCTTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGACTAA
AGGAAAGAGGGTTTAATCAGTCCGTCATACTTGCTTCCTTGATTGGTGAGCCGATCCTTCAGCCACTTGTGAAAATACAT
CAAACCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAAACAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATTTATACAACAGGGGCCACCATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (137-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	51.304	100	0.518
comFC/cflB	Streptococcus mitis NCTC 12261	39.565	100	0.399
comFC/cflB	Streptococcus mitis SK321	39.565	100	0.399
comFC/cflB	Streptococcus pneumoniae TIGR4	39.565	100	0.399
comFC/cflB	Streptococcus pneumoniae Rx1	38.865	100	0.39
comFC/cflB	Streptococcus pneumoniae D39	38.865	100	0.39
comFC/cflB	Streptococcus pneumoniae R6	38.865	100	0.39