Detailed information NTG0995122

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: AAVD42_RS09235
• Genome accession: NZ_CP154908
• Coordinates: 1554277..1555452 (-)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain FUA2116
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1549277..1560452

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVD42_RS09205 (AAVD42_09205)	-	1549445..1549864 (-)	420	WP_003212865.1	TIGR03826 family flagellar region protein	-
AAVD42_RS09210 (AAVD42_09210)	comFC	1549921..1550607 (-)	687	WP_345808232.1	ComF family protein	Machinery gene
AAVD42_RS09215 (AAVD42_09215)	-	1550604..1550897 (-)	294	WP_106066158.1	late competence development ComFB family protein	-
AAVD42_RS09220 (AAVD42_09220)	comFA	1550964..1552343 (-)	1380	WP_345808233.1	DEAD/DEAH box helicase	Machinery gene
AAVD42_RS09225 (AAVD42_09225)	-	1552463..1553305 (-)	843	WP_113768803.1	DegV family protein	-
AAVD42_RS09230 (AAVD42_09230)	degU	1553523..1554212 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
AAVD42_RS09235 (AAVD42_09235)	degS	1554277..1555452 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
AAVD42_RS09240 (AAVD42_09240)	-	1555674..1556342 (+)	669	WP_003212936.1	YigZ family protein	-
AAVD42_RS09245 (AAVD42_09245)	-	1556327..1557415 (+)	1089	WP_217012105.1	LCP family protein	-
AAVD42_RS09250 (AAVD42_09250)	-	1557452..1558519 (-)	1068	WP_003212692.1	MraY family glycosyltransferase	-
AAVD42_RS09255 (AAVD42_09255)	-	1558651..1559847 (-)	1197	WP_345808431.1	glycosyltransferase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=995122 AAVD42_RS09235 WP_003213166.1 1554277..1555452(-) (degS) [Bacillus pumilus strain FUA2116]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=995122 AAVD42_RS09235 WP_003213166.1 1554277..1555452(-) (degS) [Bacillus pumilus strain FUA2116]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGATTATCTGAGGTCAGCAGA
AATTTTAACAAATTTAGCGAAGAAGAAATACGCGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACCATGAT
CCAGCAGCGTGAAAAGCAGCTGAGAGAAAGAAGAGATGATCTAGAAAGACGATTGTTAAGCCTTCAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGCCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGCCAAGTTGGCGTGTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAGCGCAAAAGGGTATCCCGTGA
AATTCATGACGGTCCGGCCCAGATGCTGGCAAACGTAATGATGCGTTCCGAATTAATTGAACGGATTTTCAGAGACCGTG
GGACAGAAGAAGGTTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATCACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCACAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841