Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AAVD42_RS09220 Genome accession   NZ_CP154908
Coordinates   1550964..1552343 (-) Length   459 a.a.
NCBI ID   WP_345808233.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1545964..1557343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS09185 (AAVD42_09185) flgL 1546144..1547055 (-) 912 WP_034660144.1 flagellar hook-associated protein FlgL -
  AAVD42_RS09190 (AAVD42_09190) flgK 1547065..1548585 (-) 1521 WP_345808231.1 flagellar hook-associated protein FlgK -
  AAVD42_RS09195 (AAVD42_09195) - 1548601..1549083 (-) 483 WP_003213076.1 flagellar protein FlgN -
  AAVD42_RS09200 (AAVD42_09200) flgM 1549102..1549365 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAVD42_RS09205 (AAVD42_09205) - 1549445..1549864 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  AAVD42_RS09210 (AAVD42_09210) comFC 1549921..1550607 (-) 687 WP_345808232.1 ComF family protein Machinery gene
  AAVD42_RS09215 (AAVD42_09215) - 1550604..1550897 (-) 294 WP_106066158.1 late competence development ComFB family protein -
  AAVD42_RS09220 (AAVD42_09220) comFA 1550964..1552343 (-) 1380 WP_345808233.1 DEAD/DEAH box helicase Machinery gene
  AAVD42_RS09225 (AAVD42_09225) - 1552463..1553305 (-) 843 WP_113768803.1 DegV family protein -
  AAVD42_RS09230 (AAVD42_09230) degU 1553523..1554212 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AAVD42_RS09235 (AAVD42_09235) degS 1554277..1555452 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AAVD42_RS09240 (AAVD42_09240) - 1555674..1556342 (+) 669 WP_003212936.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52437.37 Da        Isoelectric Point: 10.0540

>NTDB_id=995120 AAVD42_RS09220 WP_345808233.1 1550964..1552343(-) (comFA) [Bacillus pumilus strain FUA2116]
MNMDKAMELGQYLQSRHLLTAETRCSQSDLDWLEEKGLVIRTPAIERKANGLICCRCGVSKNRYFAHSPCDKCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEEACHSELTWQGDLSKGQKRASEKLIEAIKHKSDLLIWAVCGAGKTEVLFHGIEFAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMIRDVSRGQLEAVKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=995120 AAVD42_RS09220 WP_345808233.1 1550964..1552343(-) (comFA) [Bacillus pumilus strain FUA2116]
TTGAACATGGACAAAGCAATGGAACTAGGGCAGTATCTGCAGTCACGCCACCTGCTTACTGCTGAAACAAGATGCTCACA
GTCTGATTTGGATTGGTTGGAGGAGAAAGGGTTAGTTATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTAATTT
GCTGCAGATGTGGTGTGTCAAAAAATCGGTACTTTGCCCACTCTCCGTGTGACAAGTGTCAAAAAGATTGTGTGTATTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAGCATG
TCACTCGGAATTAACATGGCAGGGAGACCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAAATTGATCGAAGCGATAAAAC
ACAAATCTGATCTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATTTGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAAAAAGCTTT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGTTAGTAATCGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGATGTGCTCATTATAGATGAAGTCGACGCCTTCCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAGAGATGTATCTCGTGGACAACTAGAAGCCGTAAAAATTCCTCTGCGCTTTCACCAACAACCTTTACCGGTCCCAT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAGAAGAATCAGCTTCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATTACAAAAAAGAGAAGGGTTTTACTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGGGTGTCTGCTGATGATCCAGATAGGAAACAAAAGGTCCAGCAATTCAGAGATGACAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACCATTCCAAATGTGCAAGTGGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCCGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(117-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.505

99.129

0.54

Multiple sequence alignment