Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AAVD42_RS09230 Genome accession   NZ_CP154908
Coordinates   1553523..1554212 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain FUA2116     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1548523..1559212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS09195 (AAVD42_09195) - 1548601..1549083 (-) 483 WP_003213076.1 flagellar protein FlgN -
  AAVD42_RS09200 (AAVD42_09200) flgM 1549102..1549365 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAVD42_RS09205 (AAVD42_09205) - 1549445..1549864 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  AAVD42_RS09210 (AAVD42_09210) comFC 1549921..1550607 (-) 687 WP_345808232.1 ComF family protein Machinery gene
  AAVD42_RS09215 (AAVD42_09215) - 1550604..1550897 (-) 294 WP_106066158.1 late competence development ComFB family protein -
  AAVD42_RS09220 (AAVD42_09220) comFA 1550964..1552343 (-) 1380 WP_345808233.1 DEAD/DEAH box helicase Machinery gene
  AAVD42_RS09225 (AAVD42_09225) - 1552463..1553305 (-) 843 WP_113768803.1 DegV family protein -
  AAVD42_RS09230 (AAVD42_09230) degU 1553523..1554212 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AAVD42_RS09235 (AAVD42_09235) degS 1554277..1555452 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AAVD42_RS09240 (AAVD42_09240) - 1555674..1556342 (+) 669 WP_003212936.1 YigZ family protein -
  AAVD42_RS09245 (AAVD42_09245) - 1556327..1557415 (+) 1089 WP_217012105.1 LCP family protein -
  AAVD42_RS09250 (AAVD42_09250) - 1557452..1558519 (-) 1068 WP_003212692.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=995121 AAVD42_RS09230 WP_008348273.1 1553523..1554212(-) (degU) [Bacillus pumilus strain FUA2116]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=995121 AAVD42_RS09230 WP_008348273.1 1553523..1554212(-) (degU) [Bacillus pumilus strain FUA2116]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTTGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment