Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAHN93_RS13530 Genome accession   NZ_CP154474
Coordinates   3045481..3046722 (+) Length   413 a.a.
NCBI ID   WP_095550006.1    Uniprot ID   A0A2A2B0D1
Organism   Vandammella animalimorsus strain W29-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3040481..3051722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHN93_RS13510 (AAHN93_13510) - 3040913..3041395 (-) 483 WP_343292824.1 uracil-DNA glycosylase family protein -
  AAHN93_RS13515 (AAHN93_13515) rimI 3041946..3042446 (-) 501 WP_343292825.1 ribosomal protein S18-alanine N-acetyltransferase -
  AAHN93_RS13520 (AAHN93_13520) - 3042470..3043387 (-) 918 WP_095551476.1 peptidoglycan DD-metalloendopeptidase family protein -
  AAHN93_RS13525 (AAHN93_13525) pilB 3043720..3045450 (+) 1731 WP_343292826.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAHN93_RS13530 (AAHN93_13530) pilC 3045481..3046722 (+) 1242 WP_095550006.1 type II secretion system F family protein Machinery gene
  AAHN93_RS13535 (AAHN93_13535) - 3046722..3047603 (+) 882 WP_343292827.1 prepilin peptidase -
  AAHN93_RS13540 (AAHN93_13540) - 3047820..3048812 (-) 993 WP_343292828.1 tripartite tricarboxylate transporter substrate binding protein -
  AAHN93_RS13545 (AAHN93_13545) - 3048923..3050149 (-) 1227 WP_343292829.1 CaiB/BaiF CoA-transferase family protein -
  AAHN93_RS13550 (AAHN93_13550) yajC 3050764..3051105 (+) 342 WP_095539810.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45267.07 Da        Isoelectric Point: 9.9040

>NTDB_id=993565 AAHN93_RS13530 WP_095550006.1 3045481..3046722(+) (pilC) [Vandammella animalimorsus strain W29-2]
MATTTAAASKGKTKNATKTFLYEWEGKDRNARLVRGEMTAAGENQVRATLRRQGIFATKIKKRRMKSGKKIKGRDIAVFT
RQLATMMRAGVPLLQSFDIVARGNPNPNVTRLLNNIKADVESGSPLSAAFRKYPLYFDNLYCNLVEAGEAAGILEDLLDR
LATYMEKMEAVKSKVKSALMYPIAVLVVAAVVLTVIMIWVIPAFKEVFTNFGADLPAPTLIVMAISDFVVQWFWLIAIVI
GAGSYFAYQAWRRNEKVQIFVDRTLLKLPIFGELVNMSSIARWTRTLSTMFAAGVPLVESLDAVGGASGNYVYRKATEDI
QKEVATGTSLTAAMTNANVFPSMVLQMTAIGEESGSLDHMLSKAADYYEAEVDTKVEGLSSLMEPIIIVVLGTLIGGIVV
AMYLPIFKLGQVV

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=993565 AAHN93_RS13530 WP_095550006.1 3045481..3046722(+) (pilC) [Vandammella animalimorsus strain W29-2]
ATGGCAACCACTACTGCGGCAGCAAGCAAGGGAAAAACCAAAAACGCTACCAAAACATTTCTTTATGAATGGGAGGGCAA
GGATCGCAATGCCCGCTTGGTGCGCGGGGAAATGACGGCCGCAGGTGAGAACCAGGTGAGAGCCACCTTGCGTCGTCAAG
GGATTTTTGCGACCAAGATCAAGAAGCGCCGCATGAAATCCGGCAAAAAGATCAAGGGGCGTGATATTGCTGTTTTCACA
CGTCAATTGGCTACCATGATGCGCGCTGGCGTGCCGCTGCTGCAGTCCTTCGATATTGTGGCGAGAGGCAACCCCAACCC
CAATGTCACTCGTCTGCTTAATAACATCAAGGCCGATGTGGAGAGCGGCAGTCCATTGAGTGCAGCTTTCAGAAAATATC
CACTGTATTTTGATAATCTCTACTGCAACTTGGTTGAGGCGGGTGAGGCAGCGGGTATTCTGGAAGACCTGCTCGATCGT
TTGGCTACCTATATGGAAAAAATGGAGGCGGTCAAATCCAAAGTGAAATCGGCGCTGATGTACCCCATTGCAGTGCTGGT
GGTTGCTGCAGTGGTGTTGACGGTGATCATGATTTGGGTGATTCCTGCTTTCAAGGAGGTTTTCACCAATTTCGGAGCCG
ATTTGCCGGCCCCTACCCTGATTGTGATGGCCATCAGTGATTTTGTTGTGCAATGGTTTTGGTTGATTGCCATCGTAATT
GGGGCGGGAAGCTATTTCGCCTATCAAGCCTGGCGCCGTAATGAGAAAGTGCAGATATTTGTCGATCGCACTTTGCTCAA
GCTGCCCATCTTTGGTGAACTGGTGAACATGTCCAGTATTGCACGCTGGACTCGCACACTGTCGACCATGTTTGCGGCTG
GGGTGCCTTTGGTGGAATCGCTGGATGCCGTGGGGGGAGCATCGGGTAATTATGTGTATCGCAAAGCTACGGAAGATATC
CAGAAAGAGGTTGCTACCGGAACCAGCCTGACAGCGGCCATGACGAACGCCAATGTTTTTCCGTCCATGGTGCTGCAAAT
GACGGCCATTGGCGAGGAGTCGGGTTCGCTGGACCATATGCTGTCCAAGGCGGCCGATTATTACGAGGCCGAGGTGGACA
CCAAGGTGGAGGGCCTGTCCTCTTTGATGGAACCCATCATCATCGTGGTGCTGGGTACCTTGATTGGCGGCATTGTGGTG
GCCATGTATTTGCCAATCTTCAAGCTGGGGCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-202)

Type II secretion system (T2SS), protein F (T2SSF)

(283-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2B0D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.485

97.821

0.504
  pilG Neisseria meningitidis 44/76-A

51.01

95.884

0.489
  pilG Neisseria gonorrhoeae MS11

51.01

95.884

0.489
  pilC Acinetobacter baumannii D1279779

49.118

96.126

0.472
  pilC Acinetobacter baylyi ADP1

48.744

96.368

0.47
  pilC Legionella pneumophila strain ERS1305867

48.02

97.821

0.47
  pilC Vibrio cholerae strain A1552

42.569

96.126

0.409
  pilC Vibrio campbellii strain DS40M4

39.646

95.884

0.38

Multiple sequence alignment