Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAHT66_RS17020 Genome accession   NZ_CP154441
Coordinates   3246760..3248010 (-) Length   416 a.a.
NCBI ID   WP_333516223.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3241760..3253010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS17005 (AAHT66_17005) rny 3242361..3243923 (-) 1563 WP_003221010.1 ribonuclease Y -
  AAHT66_RS17010 (AAHT66_17010) - 3244200..3245375 (-) 1176 WP_333516222.1 serine hydrolase domain-containing protein -
  AAHT66_RS17015 (AAHT66_17015) recA 3245544..3246587 (-) 1044 WP_087991658.1 recombinase RecA Machinery gene
  AAHT66_RS17020 (AAHT66_17020) cinA 3246760..3248010 (-) 1251 WP_333516223.1 competence/damage-inducible protein A Machinery gene
  AAHT66_RS17025 (AAHT66_17025) pgsA 3248029..3248610 (-) 582 WP_333516224.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAHT66_RS17030 (AAHT66_17030) rodZ 3248660..3249526 (-) 867 WP_207194100.1 cell shape determination protein RodZ -
  AAHT66_RS17035 (AAHT66_17035) - 3249593..3250384 (-) 792 WP_087991654.1 DUF3388 domain-containing protein -
  AAHT66_RS17040 (AAHT66_17040) - 3250514..3250771 (-) 258 WP_087991653.1 DUF3243 domain-containing protein -
  AAHT66_RS17045 (AAHT66_17045) - 3250852..3251580 (-) 729 WP_087991652.1 elongation factor P 5-aminopentanone reductase -
  AAHT66_RS17050 (AAHT66_17050) - 3251634..3252920 (-) 1287 WP_333516225.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45351.73 Da        Isoelectric Point: 6.0296

>NTDB_id=993372 AAHT66_RS17020 WP_333516223.1 3246760..3248010(-) (cinA) [Bacillus inaquosorum strain XN303]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRTAEERSDFIVFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKKTGRLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITIAAAESFTGGLFSEWLTDLSGASTLFTGGVVCYSNDVKQHVLG
VKKDTLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQAGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=993372 AAHT66_RS17020 WP_333516223.1 3246760..3248010(-) (cinA) [Bacillus inaquosorum strain XN303]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCTGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGAGTGAACGTATTTTATCATACAGCAGTCGGAGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGTACTGCTGAAGAACGATCTGACTTCATTGTTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATGTGCTGGGCCGTCCGCTCGTATTAAATGATGAAGCGTTCCAATCCATTGAGGATTATTT
CAAACGGACAAAACGAACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGATCTGACGTACTGGCGAATC
ACTTCGGAATGGCGCCGGGAATGCTCACAGAGCACGATTCGCGCTTTTATATGCTTCTTCCTGGGCCGCCAAGCGAATTG
CGTCCCATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGCTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGACTTGGAAGATATTATTGATGCGCAAACGAACCCGACAATCG
CTCCTTTGGCGGCTGACGGAGAGGTAACGCTGCGTCTGACAGCCAAACATGCTGACGAAAAGAAAACGGGGCGTCTGTTA
AAAGAAACAGAGGCTGTTATCTTAGAACGTGTCGGGGAATTTTTCTATGGCTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAGGCATTACGATTGCCGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAACACTATTTACCGGCGGCGTTGTTTGCTATTCAAACGACGTGAAGCAGCATGTGCTTGGC
GTCAAGAAGGATACTTTAGACCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGCAGCGATATCGGCATCAGCTTTACCGGTGTAGCAGGTCCTGATACGCAAGCAGGGCATGAGCCTGGACATGTGT
TTATCGGCATTTCAGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGTTCCAGAACGGGAATCAGAAAACGC
GGCGCCAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

95.913

100

0.959
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus mitis SK321

45.215

100

0.454
  cinA Streptococcus mitis NCTC 12261

45.215

100

0.454
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

42.175

90.625

0.382

Multiple sequence alignment