Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAG068_RS18680 Genome accession   NZ_CP152427
Coordinates   3647028..3648266 (-) Length   412 a.a.
NCBI ID   WP_342715424.1    Uniprot ID   -
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3642028..3653266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS18655 (AAG068_18655) spoVS 3642110..3642370 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  AAG068_RS18660 (AAG068_18660) - 3642520..3643314 (-) 795 WP_144614469.1 TIGR00282 family metallophosphoesterase -
  AAG068_RS18665 (AAG068_18665) rny 3643479..3645044 (-) 1566 WP_342715423.1 ribonuclease Y -
  AAG068_RS18670 (AAG068_18670) - 3645526..3645948 (-) 423 Protein_3615 DNA recombination/repair protein RecA -
  AAG068_RS18675 (AAG068_18675) recA 3646276..3646884 (-) 609 Protein_3616 recombinase RecA -
  AAG068_RS18680 (AAG068_18680) cinA 3647028..3648266 (-) 1239 WP_342715424.1 competence/damage-inducible protein CinA Machinery gene
  AAG068_RS18685 (AAG068_18685) pgsA 3648287..3648865 (-) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAG068_RS18690 (AAG068_18690) - 3648929..3649840 (-) 912 WP_342715425.1 RodZ domain-containing protein -
  AAG068_RS18695 (AAG068_18695) - 3649862..3650647 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  AAG068_RS18700 (AAG068_18700) - 3650787..3651035 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  AAG068_RS18705 (AAG068_18705) - 3651111..3651824 (-) 714 WP_342715427.1 SDR family oxidoreductase -
  AAG068_RS18710 (AAG068_18710) - 3651928..3653214 (-) 1287 WP_342715428.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45370.55 Da        Isoelectric Point: 4.9577

>NTDB_id=989324 AAG068_RS18680 WP_342715424.1 3647028..3648266(-) (cinA) [Bacillus paramycoides strain JYZ-SD5]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNTRLQQAIEVAEKRADMLIFTGGLGPTKDDLTKET
ISSSLDGELVYDEQALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQKADEAEKLIQHTED
LILERVGEFFYGYDQEFLHDKAIELLKKKELTLACAESLTGGLFGNQVTESAGVSSIFKGGVICYHNDVKQHVLHVAEEV
LSTEGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLGGSRQQIRERSVKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=989324 AAG068_RS18680 WP_342715424.1 3647028..3648266(-) (cinA) [Bacillus paramycoides strain JYZ-SD5]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGCATTAATGTGTACTACCATACTGTAGTTGGGGATAATAACACGCGATTACAGCAGGCGATTG
AAGTTGCGGAAAAACGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAAGAAACG
ATATCTTCTAGTTTGGATGGAGAGCTAGTGTATGATGAACAGGCATTAGCATCAATAAGCGATTACTTTAAGCGTACAGG
TCGCGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCGACTGTATTTGCGAATGATCATGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGCTTCTTCGGGAT
TGGGGAATCTCAATTAGAAGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATCGCCCCTCTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAGCATCAAAAGGCTGATGAAGCGGAGAAGCTCATTCAGCATACAGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGAATTAACTTTAGCATGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAATATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTAGCTGAGGAAGTG
TTGTCTACTGAAGGTGCTGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGTGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCAGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAGGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGTAAAATAT
GGGTTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus mitis SK321

47.494

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

40.447

97.816

0.396

Multiple sequence alignment