Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACOIV2_RS25270 Genome accession   NZ_CP184779
Coordinates   5408520..5409152 (-) Length   210 a.a.
NCBI ID   WP_014494833.1    Uniprot ID   A0A0A3YMQ2
Organism   Bradyrhizobium japonicum strain B101     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5403520..5414152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOIV2_RS25255 (ACOIV2_25255) - 5403565..5403969 (-) 405 WP_212100501.1 GFA family protein -
  ACOIV2_RS25260 (ACOIV2_25260) lon 5404039..5406462 (-) 2424 WP_014494835.1 endopeptidase La -
  ACOIV2_RS25265 (ACOIV2_25265) clpX 5406787..5408058 (-) 1272 WP_014494834.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACOIV2_RS25270 (ACOIV2_25270) clpP 5408520..5409152 (-) 633 WP_014494833.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACOIV2_RS25275 (ACOIV2_25275) tig 5409456..5410817 (-) 1362 WP_253571627.1 trigger factor -
  ACOIV2_RS25285 (ACOIV2_25285) - 5411230..5412570 (+) 1341 WP_028170227.1 multicopper oxidase family protein -
  ACOIV2_RS25290 (ACOIV2_25290) - 5412613..5413047 (-) 435 WP_014494830.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23407.03 Da        Isoelectric Point: 5.7683

>NTDB_id=989323 ACOIV2_RS25270 WP_014494833.1 5408520..5409152(-) (clpP) [Bradyrhizobium japonicum strain B101]
MRDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISMYINSPGGVVT
SGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNE
IYVKHTGQTYKTIEDALERDKFLTANDAKEFGLVDKVIDKRAEEPAAKPQ

Nucleotide


Download         Length: 633 bp        

>NTDB_id=989323 ACOIV2_RS25270 WP_014494833.1 5408520..5409152(-) (clpP) [Bradyrhizobium japonicum strain B101]
ATGCGCGATCCGGTTGAAACCTATATGAACCTCGTGCCCATGGTGGTCGAGCAGACCAACCGTGGCGAGCGCGCCTACGA
CATCTTTTCGCGCCTGTTGAAGGAGCGCATCATTTTCCTGACCGGGCCGGTCGAGGACGGCATGTCGACGCTGGTGGTCG
CACAGCTCCTGTTCCTTGAAGCGGAAAATCCGAAGAAGGAAATCTCGATGTACATCAACTCGCCGGGCGGCGTGGTGACG
TCGGGCCTCGCGATCTACGACACCATGCAGTTCATCCGCCCGCCGGTCTCGACGCTATGCACGGGCCAGGCCGCCTCGAT
GGGCTCGCTGCTGCTCGCCGCCGGCGAGAAGGACATGCGCTTCTCGCTGCCGAACGCGCGCATCATGGTGCATCAGCCCT
CGGGCGGCTTCCAGGGCCAGGCCACCGACATCATGCTGCACGCGCAGGAAATCCTGAACCTGAAGAAGCGGCTCAACGAG
ATCTACGTGAAGCACACCGGTCAGACCTACAAGACGATCGAGGACGCGCTGGAACGCGACAAGTTCCTGACCGCGAACGA
CGCCAAGGAGTTCGGCCTGGTCGACAAGGTCATCGACAAGCGCGCCGAGGAGCCGGCGGCGAAACCGCAGTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3YMQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.474

90.476

0.538
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.421

90.476

0.529
  clpP Lactococcus lactis subsp. cremoris KW2

48.969

92.381

0.452
  clpP Streptococcus pyogenes MGAS315

48.168

90.952

0.438
  clpP Streptococcus pyogenes JRS4

48.168

90.952

0.438
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

47.423

92.381

0.438
  clpP Streptococcus mutans UA159

47.396

91.429

0.433
  clpP Streptococcus pneumoniae D39

47.368

90.476

0.429
  clpP Streptococcus pneumoniae TIGR4

47.368

90.476

0.429
  clpP Streptococcus pneumoniae R6

47.368

90.476

0.429
  clpP Streptococcus pneumoniae Rx1

47.368

90.476

0.429
  clpP Streptococcus thermophilus LMG 18311

46.316

90.476

0.419
  clpP Streptococcus thermophilus LMD-9

46.316

90.476

0.419