Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AAG068_RS13655 Genome accession   NZ_CP152427
Coordinates   2645610..2646191 (-) Length   193 a.a.
NCBI ID   WP_000991609.1    Uniprot ID   A0A853X8N5
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2640610..2651191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS13625 (AAG068_13625) - 2640894..2641718 (-) 825 WP_342719688.1 PP2C family serine/threonine-protein phosphatase -
  AAG068_RS13630 (AAG068_13630) - 2641831..2641998 (-) 168 WP_342719689.1 septum formation initiator -
  AAG068_RS13635 (AAG068_13635) - 2642216..2642452 (+) 237 WP_342719690.1 hypothetical protein -
  AAG068_RS13640 (AAG068_13640) - 2642501..2643337 (-) 837 WP_001059838.1 proline/glycine betaine ABC transporter permease -
  AAG068_RS13645 (AAG068_13645) - 2643330..2644535 (-) 1206 WP_342719691.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  AAG068_RS13650 (AAG068_13650) - 2644707..2645564 (+) 858 WP_342719692.1 glycine betaine ABC transporter substrate-binding protein -
  AAG068_RS13655 (AAG068_13655) clpP 2645610..2646191 (-) 582 WP_000991609.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AAG068_RS13660 (AAG068_13660) - 2646213..2646899 (-) 687 WP_342714616.1 RNA polymerase subunit sigma-70 -
  AAG068_RS13665 (AAG068_13665) - 2647043..2647363 (+) 321 WP_342714617.1 2Fe-2S iron-sulfur cluster-binding protein -
  AAG068_RS13670 (AAG068_13670) rpiA 2647365..2648030 (+) 666 WP_342714618.1 ribose 5-phosphate isomerase A -
  AAG068_RS13675 (AAG068_13675) - 2648137..2648571 (+) 435 WP_342714619.1 GNAT family N-acetyltransferase -
  AAG068_RS13680 (AAG068_13680) - 2648689..2650056 (-) 1368 WP_342714620.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21192.49 Da        Isoelectric Point: 5.3394

>NTDB_id=989322 AAG068_RS13655 WP_000991609.1 2645610..2646191(-) (clpP) [Bacillus paramycoides strain JYZ-SD5]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=989322 AAG068_RS13655 WP_000991609.1 2645610..2646191(-) (clpP) [Bacillus paramycoides strain JYZ-SD5]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGCATTATTATTATTGGTTCAGAAATAAATGATCAAGTAGCGAGCAGTGTCGTAGCTCAATTATTATTTTTAGAAGCGG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATTTAATCAAACCAGATGTACAAACGCTATGCATGGGATTTGCAGCATCATTTGGTGCTTTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCGCTACCTAACAGTGAAATTATGATTCATCAACCGCTTGGTGGTGCAAAGGGGCAGGCTA
CGGAAATTGAAATAACAGCAAAAAGGATATTGAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTCATGACTGCAGAAGAAGCGAAAGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853X8N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.196

97.927

0.658
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMG 18311

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMD-9

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus mutans UA159

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

97.927

0.492

Multiple sequence alignment