Detailed information NTG0989322

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACOIV2_RS25265
• Genome accession: NZ_CP184779
• Coordinates: 5406787..5408058 (-)
• Length: 423 a.a.
• NCBI ID: WP_014494834.1
• Uniprot ID: A0ABY7MCD4
• Organism: Bradyrhizobium japonicum strain B101
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5401787..5413058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOIV2_RS25250 (ACOIV2_25250)	-	5402401..5402655 (-)	255	WP_253571625.1	hypothetical protein	-
ACOIV2_RS25255 (ACOIV2_25255)	-	5403565..5403969 (-)	405	WP_212100501.1	GFA family protein	-
ACOIV2_RS25260 (ACOIV2_25260)	lon	5404039..5406462 (-)	2424	WP_014494835.1	endopeptidase La	-
ACOIV2_RS25265 (ACOIV2_25265)	clpX	5406787..5408058 (-)	1272	WP_014494834.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACOIV2_RS25270 (ACOIV2_25270)	clpP	5408520..5409152 (-)	633	WP_014494833.1	ATP-dependent Clp protease proteolytic subunit	Regulator
ACOIV2_RS25275 (ACOIV2_25275)	tig	5409456..5410817 (-)	1362	WP_253571627.1	trigger factor	-
ACOIV2_RS25285 (ACOIV2_25285)	-	5411230..5412570 (+)	1341	WP_028170227.1	multicopper oxidase family protein	-
ACOIV2_RS25290 (ACOIV2_25290)	-	5412613..5413047 (-)	435	WP_014494830.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46576.40 Da
• Isoelectric Point: 5.5461

>NTDB_id=989322 ACOIV2_RS25265 WP_014494834.1 5406787..5408058(-) (clpX) [Bradyrhizobium japonicum strain B101]
MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSRDGIPTPKEICKVLDDYVIGQ
SHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENI
ILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT
NILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDETSLK
KILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILEAILLETMFDLPGLEGVEEVVISREVV
EGTARPLYIYADRSDRAVENASA

Nucleotide

• Length: 1272 bp

>NTDB_id=989322 ACOIV2_RS25265 WP_014494834.1 5406787..5408058(-) (clpX) [Bradyrhizobium japonicum strain B101]
ATGAGTAAGGTCGGCACGAGCGACTCCAAGAACACGCTGTATTGCTCGTTCTGCGGCAAGAGCCAGCACGAAGTCCGCAA
ACTGATCGCGGGTCCCACGGTCTTCATCTGCGACGAGTGCGTTGAGCTCTGCATGGACATCATCCGCGAGGAGAACAAAT
CCTCGCTCGTGAAGTCGCGCGACGGCATTCCGACGCCGAAGGAAATCTGCAAGGTCCTGGACGATTACGTCATCGGCCAG
AGCCATGCGAAGAAGGTCCTGTCGGTCGCGGTGCACAATCACTACAAGCGCCTCAACCACCAGACCAAGCACAACGACGT
CGAGCTCGCGAAGTCGAACATCCTGCTGATCGGTCCGACCGGTTCGGGCAAGACGCTGCTCGCGCAGACGCTCGCCCGCA
TCCTGGACGTGCCGTTCACGATGGCCGATGCAACGACGCTGACCGAAGCCGGCTATGTCGGCGAGGACGTCGAGAACATC
ATCCTGAAGCTGCTCCAGGCCGCCGACTACAATGTCGAGCGCGCCCAGCGCGGCATCGTCTACATCGACGAAATCGACAA
GATCAGCCGCAAGTCCGACAATCCCTCGATCACGCGCGACGTGTCGGGTGAGGGCGTGCAGCAGGCGTTGCTGAAGATCA
TGGAAGGCACGGTGGCTTCGGTCCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAGTTCCTGCAGGTGGATACCACC
AACATCCTGTTCATCTGCGGCGGTGCGTTCGCCGGCCTCGAGAAGATCATCTCGGCGCGCGGGCGGTCGACCTCGATCGG
CTTCGCCGCCCAGGTGCTGGCGCCGGAGGATCGCCGTACCGGCGAGATCTTCCGTCACGTCGAGCCTGAGGACCTCCTGA
AGTACGGCCTCATCCCCGAATTCGTCGGCCGTCTGCCGGTCGTGGCGACGCTTGAGGATCTGGACGAGACCTCGCTGAAG
AAGATCCTCACCGAGCCGAAGAACGCGCTGGTGAAACAGTACCAGCGGCTGTTCGAGATGGAGAACATCGAGCTGACCTT
CGCCGACGAGGCGCTTGGCGCGGTCGCCCGCAAGGCGATCGAGCGCAAGACCGGCGCGCGTGGTCTGCGTTCGATCCTCG
AGGCGATCCTGCTCGAGACCATGTTCGACCTGCCGGGCCTGGAAGGTGTGGAAGAAGTCGTGATTTCGCGCGAAGTCGTG
GAAGGCACGGCCCGTCCGCTCTACATCTACGCCGATCGGTCCGATCGCGCAGTCGAGAACGCCAGCGCCTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (314-385)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.728	95.745	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.745	0.527