Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAFQ93_RS01190 Genome accession   NZ_CP152419
Coordinates   249495..250763 (-) Length   422 a.a.
NCBI ID   WP_375555396.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 244495..255763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS01165 (AAFQ93_01165) - 244768..245484 (-) 717 WP_223140278.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AAFQ93_RS01170 (AAFQ93_01170) - 245582..246952 (-) 1371 WP_223140279.1 MATE family efflux transporter -
  AAFQ93_RS01175 (AAFQ93_01175) - 247062..247616 (+) 555 WP_223140280.1 GNAT family N-acetyltransferase -
  AAFQ93_RS01180 (AAFQ93_01180) - 247822..248016 (-) 195 WP_049502854.1 PspC domain-containing protein -
  AAFQ93_RS01185 (AAFQ93_01185) recA 248299..249453 (-) 1155 WP_045762591.1 recombinase RecA Machinery gene
  AAFQ93_RS01190 (AAFQ93_01190) cinA 249495..250763 (-) 1269 WP_375555396.1 competence/damage-inducible protein A Machinery gene
  AAFQ93_RS01195 (AAFQ93_01195) brpA 250843..251880 (-) 1038 WP_049502894.1 biofilm formation/cell division transcriptional regulator BrpA -
  AAFQ93_RS01200 (AAFQ93_01200) - 251885..252406 (-) 522 WP_375555397.1 GNAT family N-acetyltransferase -
  AAFQ93_RS01205 (AAFQ93_01205) tsaE 252396..252839 (-) 444 WP_045762634.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  AAFQ93_RS01210 (AAFQ93_01210) - 252926..254347 (-) 1422 WP_375555398.1 NCS2 family permease -
  AAFQ93_RS01215 (AAFQ93_01215) - 254544..255356 (+) 813 WP_375555399.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45493.90 Da        Isoelectric Point: 4.5452

>NTDB_id=989145 AAFQ93_RS01190 WP_375555396.1 249495..250763(-) (cinA) [Streptococcus nidrosiense strain SO-23-1]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEARLLSLLEIAQNRSSLVILTGGLGPTEDDLTKQT
LAQFLGRDLTFDPQAQAKLDDFFAHRPDYARTPNNERQAQIVQGSTPLPNETGLAVGGMIEVAGVTYVVLPGPPSELKPM
VLNELLPRLTTGSKLYSRVLRFFGIGESQLVTILSDLIDQQTDPTLAPYAKTGEVTLRISTKAKSQEEADRVLDTLEQKI
LERETFEGVLLREICYGYGEETSLASLVVEELKKQKKTITAAESLTAGLFQATLADFSGVSAIFKGGFVTYSLEEKAKML
DIPQAELEKYGVVSAFTAEKMAEQARIKTQSDFGISLTGVAGPDSLEGHPAGTVFIALAQVSGTEVVQANIAGRSRGDVR
EIAVLHAFNLVRKALLSAGDLL

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=989145 AAFQ93_RS01190 WP_375555396.1 249495..250763(-) (cinA) [Streptococcus nidrosiense strain SO-23-1]
ATGAAAGCAGAAATTATAGCTGTTGGAACAGAGATTTTGACAGGTCAGATTGTCAATACCAATGCGCAATTCTTGTCTGA
AAAGTTGGCTGAAATCGGTGTAGATGTCTATTTTCAGACGGCTGTAGGAGATAACGAGGCTCGTCTCTTATCCTTGTTAG
AAATTGCTCAGAATCGCAGTAGTCTAGTTATTTTAACAGGTGGCTTGGGGCCAACGGAAGATGATTTGACCAAGCAAACT
TTAGCCCAATTTTTAGGACGTGACTTGACTTTTGATCCTCAGGCTCAGGCTAAGCTGGATGACTTTTTTGCTCACCGACC
AGACTATGCTCGAACTCCAAATAATGAACGCCAGGCTCAAATTGTTCAAGGTTCAACTCCATTACCAAACGAAACAGGGC
TAGCAGTAGGTGGCATGATTGAAGTGGCTGGGGTAACCTACGTCGTTCTACCAGGACCTCCAAGTGAATTGAAACCTATG
GTCTTAAATGAGCTGCTTCCGAGATTGACAACGGGCTCTAAACTCTATTCACGTGTGCTGCGTTTCTTTGGGATTGGCGA
GAGCCAGTTAGTGACCATTCTATCAGATTTAATTGACCAGCAGACAGATCCAACCTTAGCACCTTATGCTAAAACTGGGG
AAGTGACCCTTCGCATATCGACCAAGGCTAAGAGTCAAGAAGAAGCGGATCGTGTTCTAGATACTCTAGAACAAAAAATC
CTTGAAAGAGAAACCTTTGAGGGTGTTTTACTTCGAGAAATTTGCTATGGCTATGGGGAAGAAACCAGCTTGGCTAGCCT
GGTAGTAGAAGAGTTGAAAAAGCAAAAGAAAACCATTACCGCAGCAGAAAGCTTGACTGCAGGTCTTTTTCAAGCTACTT
TGGCAGATTTTTCAGGTGTATCTGCTATTTTTAAAGGTGGTTTTGTGACTTATAGCCTTGAAGAAAAAGCAAAAATGCTT
GATATTCCACAGGCTGAATTGGAAAAATATGGAGTCGTCTCAGCCTTTACTGCTGAAAAAATGGCTGAACAGGCGCGCAT
CAAAACCCAGTCAGATTTTGGAATTAGTTTGACAGGAGTGGCTGGACCAGACAGCCTAGAAGGACATCCAGCAGGTACAG
TCTTTATCGCTTTGGCACAAGTTTCGGGTACAGAAGTTGTCCAGGCAAATATCGCAGGTAGAAGTCGTGGAGATGTGCGA
GAAATTGCAGTCCTACATGCCTTTAACCTAGTTCGCAAAGCTTTATTAAGTGCTGGAGATTTGTTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

86.331

98.815

0.853
  cinA Streptococcus mitis NCTC 12261

85.372

98.815

0.844
  cinA Streptococcus pneumoniae TIGR4

84.173

98.815

0.832
  cinA Streptococcus pneumoniae Rx1

83.933

98.815

0.829
  cinA Streptococcus pneumoniae R6

83.933

98.815

0.829
  cinA Streptococcus pneumoniae D39

83.693

98.815

0.827
  cinA Streptococcus mutans UA159

70.213

100

0.704
  cinA Streptococcus suis isolate S10

55.048

98.578

0.543
  cinA Bacillus subtilis subsp. subtilis str. 168

46.651

99.052

0.462

Multiple sequence alignment