Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   AAFQ93_RS00480 Genome accession   NZ_CP152419
Coordinates   116596..118575 (-) Length   659 a.a.
NCBI ID   WP_375555347.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 111596..123575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS00460 (AAFQ93_00460) amiF 112095..113021 (-) 927 WP_375555344.1 ATP-binding cassette domain-containing protein Regulator
  AAFQ93_RS00465 (AAFQ93_00465) amiE 113032..114099 (-) 1068 WP_375555345.1 ABC transporter ATP-binding protein Regulator
  AAFQ93_RS00470 (AAFQ93_00470) amiD 114108..115034 (-) 927 WP_049528229.1 oligopeptide ABC transporter permease OppC Regulator
  AAFQ93_RS00475 (AAFQ93_00475) amiC 115034..116530 (-) 1497 WP_375555346.1 ABC transporter permease Regulator
  AAFQ93_RS00480 (AAFQ93_00480) amiA 116596..118575 (-) 1980 WP_375555347.1 peptide ABC transporter substrate-binding protein Regulator
  AAFQ93_RS00490 (AAFQ93_00490) - 118911..120242 (-) 1332 WP_049502736.1 hemolysin family protein -
  AAFQ93_RS00495 (AAFQ93_00495) endA 120495..121325 (-) 831 WP_049503082.1 DNA/RNA non-specific endonuclease Machinery gene
  AAFQ93_RS00500 (AAFQ93_00500) - 121644..121832 (-) 189 WP_049502949.1 DNA-directed RNA polymerase subunit beta -
  AAFQ93_RS00505 (AAFQ93_00505) murA 121825..123111 (-) 1287 WP_070460789.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AAFQ93_RS00510 (AAFQ93_00510) - 123137..123367 (-) 231 WP_000615324.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72511.27 Da        Isoelectric Point: 4.7531

>NTDB_id=989128 AAFQ93_RS00480 WP_375555347.1 116596..118575(-) (amiA) [Streptococcus nidrosiense strain SO-23-1]
MKKSRIFAVAGVALLATGVLAACGSSKSSNAEAPKAYGYTYTADPETLDYLISGKQSTKVATSNGIDGLFTSDKYGNLTP
AVAEDWSVSQDGLTYTYKIRKGVKWLTSDGEEYAEVTANDFVTGLKHAADNKSAALYLAQNSVKGLADYVSGNNTDFSAV
GVKAVDDYTLQYTLNQPEPYWNSKLSYAIFWPLNAEFEKSKGKDFGKATDPTSLLYNGPFLLKGLTAKSSIEFAKNDQYW
DKDNVHIDTVTLSYYDGSDQESLERNFTNGAYSYARLFPTSSNYSKVAETYKDNIYYTPQGASIAGLGVNIDRQSYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTAYSAQLNGKDGAALAVRNLFVKPEFVSAGEKTFGDLVNEKVVSYGDEWKD
VNFADGQDGLYNADKAKAELAKAKKDLEADGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETALGTDNVVIDIQQITTDE
LQNVTYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKSTNSETTKTYMGYDNPSNPAVAQVGLKDYDKLVDDAASETS
DLNKRYEKYAAAQAWLTDSSLFLPAMSSTGAAPVISRVVPFSASYTQSGDKGSDIYFKYLQLQANTVTTKEYKEAREKWL
KEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=989128 AAFQ93_RS00480 WP_375555347.1 116596..118575(-) (amiA) [Streptococcus nidrosiense strain SO-23-1]
ATGAAAAAAAGTCGTATTTTTGCAGTAGCAGGGGTTGCGCTACTTGCAACAGGTGTTCTCGCAGCTTGCGGTTCTTCAAA
ATCATCAAATGCTGAAGCACCAAAGGCTTATGGCTATACTTATACTGCTGACCCAGAAACATTGGACTATCTTATCTCTG
GTAAACAAAGTACTAAAGTTGCCACTTCAAACGGTATCGACGGGCTCTTTACAAGTGATAAGTATGGTAACCTTACTCCT
GCAGTCGCAGAAGACTGGTCAGTGTCTCAAGATGGTTTAACATACACTTACAAAATTCGTAAAGGTGTAAAATGGTTAAC
ATCTGATGGTGAAGAATATGCAGAAGTAACTGCAAATGACTTTGTTACAGGTTTGAAACACGCAGCCGACAATAAATCAG
CCGCTCTTTACCTAGCACAAAATTCTGTTAAAGGATTGGCTGACTATGTATCAGGGAACAATACAGACTTCTCTGCTGTA
GGTGTAAAAGCTGTTGATGATTACACTCTTCAATACACTTTGAACCAACCAGAACCATACTGGAACTCTAAATTGTCTTA
CGCAATCTTCTGGCCTTTGAACGCAGAGTTTGAAAAATCAAAAGGTAAAGACTTTGGTAAGGCGACAGATCCAACATCAT
TGCTTTACAATGGTCCATTCTTGCTTAAGGGATTGACAGCTAAGTCTTCTATCGAATTTGCAAAGAATGATCAGTATTGG
GATAAGGACAATGTTCACATCGATACTGTAACACTTTCTTACTATGATGGTTCAGACCAAGAGTCACTTGAGCGTAACTT
TACAAATGGTGCATACAGTTATGCCCGTCTCTTCCCTACTAGCTCAAACTATTCTAAGGTAGCAGAAACATATAAAGACA
ATATTTACTATACTCCACAAGGAGCTAGTATTGCTGGTTTGGGTGTTAATATTGACCGTCAAAGCTATAAGTACACATCA
AAAACAACTGACGAAGAAAAAACATCTACTAAGAAAGCCCTTCTTAATAAAGATTTCCGTCAAGCTTTGAACTTTGCTTT
TGATCGTACTGCTTATTCAGCTCAGCTAAATGGTAAGGATGGAGCAGCCCTTGCTGTCCGTAACCTCTTCGTAAAACCAG
AATTTGTTTCAGCAGGTGAAAAAACATTTGGTGACTTGGTCAATGAGAAAGTTGTTTCTTATGGTGATGAGTGGAAAGAT
GTAAACTTTGCGGATGGCCAAGATGGTCTTTACAATGCTGATAAAGCTAAAGCAGAACTAGCTAAAGCTAAAAAAGACCT
TGAAGCAGATGGTGTGAAATTCCCAATCCACTTGGATATTCCAGTTGACCAAACATCTAAAAACTATATCGCTCGTATCC
AATCATTTAAACAATCTGTTGAGACTGCTTTGGGTACAGATAATGTAGTCATCGATATCCAACAAATCACTACAGATGAA
TTACAAAACGTCACATATTATGCAGCTAGTGCAGCAGCAGAAGATTGGGATCTTTCAGGTGCCGTTGGATGGAACCCAGA
CTATGAAGATCCGTCAACTTACCTTGATATCCTAAAATCTACTAACAGTGAAACAACTAAGACTTACATGGGCTATGATA
ATCCATCAAACCCAGCGGTCGCTCAAGTTGGCTTGAAAGACTATGACAAATTAGTTGATGATGCAGCTAGTGAAACAAGC
GATCTTAACAAACGTTATGAGAAATATGCAGCAGCTCAAGCTTGGTTGACAGATAGCTCACTCTTCCTTCCAGCTATGTC
TTCTACAGGAGCAGCACCAGTTATTTCTCGTGTAGTGCCATTCTCAGCATCTTACACTCAATCTGGTGATAAAGGCTCAG
ATATTTACTTCAAATATCTTCAATTGCAAGCAAACACTGTAACAACCAAAGAGTACAAAGAAGCTCGTGAAAAATGGCTC
AAAGAAAAAGCTGAATCAAACGAAAAAGCTCAAAAAGAGTTAGCGAGTCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.044

100

0.69
  amiA3 Streptococcus thermophilus LMG 18311

67.727

100

0.678
  amiA3 Streptococcus thermophilus LMD-9

67.576

100

0.677

Multiple sequence alignment