Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   AAFQ93_RS00475 Genome accession   NZ_CP152419
Coordinates   115034..116530 (-) Length   498 a.a.
NCBI ID   WP_375555346.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 110034..121530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS00455 (AAFQ93_00455) - 110666..111649 (-) 984 WP_375555343.1 acetylxylan esterase -
  AAFQ93_RS00460 (AAFQ93_00460) amiF 112095..113021 (-) 927 WP_375555344.1 ATP-binding cassette domain-containing protein Regulator
  AAFQ93_RS00465 (AAFQ93_00465) amiE 113032..114099 (-) 1068 WP_375555345.1 ABC transporter ATP-binding protein Regulator
  AAFQ93_RS00470 (AAFQ93_00470) amiD 114108..115034 (-) 927 WP_049528229.1 oligopeptide ABC transporter permease OppC Regulator
  AAFQ93_RS00475 (AAFQ93_00475) amiC 115034..116530 (-) 1497 WP_375555346.1 ABC transporter permease Regulator
  AAFQ93_RS00480 (AAFQ93_00480) amiA 116596..118575 (-) 1980 WP_375555347.1 peptide ABC transporter substrate-binding protein Regulator
  AAFQ93_RS00490 (AAFQ93_00490) - 118911..120242 (-) 1332 WP_049502736.1 hemolysin family protein -
  AAFQ93_RS00495 (AAFQ93_00495) endA 120495..121325 (-) 831 WP_049503082.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55783.18 Da        Isoelectric Point: 8.9591

>NTDB_id=989127 AAFQ93_RS00475 WP_375555346.1 115034..116530(-) (amiC) [Streptococcus nidrosiense strain SO-23-1]
MKKYVFMRILRSLVSIFLVTTLIYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
SIDSSVTVDANDTNKAIYEKYIQQLGNGWTLGEFTESGQFYATREIPIFERVFKFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
NIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAITGLIGLAISYAIAIPLGSAMARFKNTWIDSFATGT
LTFLLALPTIALVYIIRLIGSSIGFPDSFPILGAGDWRSYVLPAVILGLLGAPTMAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISDKHIFKNAMVPLVSGIPGAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNNMVVGLVFIFTCVSIFSNLIGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=989127 AAFQ93_RS00475 WP_375555346.1 115034..116530(-) (amiC) [Streptococcus nidrosiense strain SO-23-1]
ATGAAAAAATATGTTTTTATGCGTATCTTGCGGTCGTTGGTTTCTATTTTCTTAGTAACGACCTTGATTTACACAATCAT
CTATACGATGGTTCCACGGAAGTTGATCTTCAAACAAGATACTAACTACAATAAAATTGCAACAACAGCTGATAAACGTG
ATAACTATGAAAATACCGTTTATGAGCGTATGGGGTATATCGAATATTACGATACGAAAGAGTTGCAGGAAAAAGCTAGT
AGCATTGACTCTTCTGTTACAGTAGATGCAAATGATACAAATAAAGCTATCTATGAAAAATATATCCAACAACTTGGTAA
TGGTTGGACTCTAGGTGAGTTTACAGAGAGCGGTCAATTCTATGCTACTCGTGAAATTCCTATTTTTGAGCGTGTGTTCA
AATTCTACGCAAACTTGCTTGATATTGACCATACAAACAAGATCCAAGACCCTGAGAATCCTAACTTAGAGCGTTATTTG
CGCTTTGAGAATGACCCTGCGATCGGTTGGTCTCTTGTGGGTTCAGGTACTAAACACAAATACCTCTTGTACTTCAATAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTCAACTTGAACCTAGGAGATTCTTATCCAACTTATGCAAATACTCCTGTTC
TTCAAGTTATTACACAAGGACAAGGACAAACGAAGACTTCTGAAGTTCAATTCCCAACTGGTAAGAAAACATCATCAGTT
AACATTTACTCAAGAACTTATAAATCTCCGAGTCAAGCAGATGCTCGTGAAGTAGCGAACTACGGTAAAGATGATCCATA
TACAGCTACTGAAAGCAACTATCAGTACCCATCTATGATTGCAAGTTCTGCTATCACTGGTTTGATTGGTCTTGCGATTT
CATATGCGATTGCGATTCCTCTTGGTTCAGCAATGGCTCGTTTCAAAAACACTTGGATCGATAGTTTCGCAACAGGGACT
TTAACGTTCTTGTTGGCTCTTCCAACGATTGCCCTAGTTTATATTATTCGTTTGATTGGTTCTTCAATCGGCTTCCCAGA
CTCATTCCCAATCTTGGGTGCTGGTGATTGGCGTTCTTATGTCCTTCCTGCAGTGATTCTGGGATTGCTAGGAGCACCTA
CTATGGCAATTTGGATTCGCCGTTATATGATTGACTTGCAATCACAAGATTTCGTTCGTTTTGCTCGTGCTAAAGGTTTG
TCTGAGAAAGAGATTTCTGATAAGCACATCTTTAAAAATGCTATGGTACCACTTGTTTCTGGTATTCCAGGTGCTATCAT
TGGTGTTATTGGTGGAGCAACTCTTACAGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATCGACTCTGTAA
AGGCTTCAAACAATAATATGGTAGTTGGTCTTGTCTTTATCTTCACTTGTGTCTCAATCTTCTCAAACCTTATTGGTGAT
ATTTGGATGACGATTATTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761

Multiple sequence alignment