Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   AAFQ93_RS00465 Genome accession   NZ_CP152419
Coordinates   113032..114099 (-) Length   355 a.a.
NCBI ID   WP_375555345.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 108032..119099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS00455 (AAFQ93_00455) - 110666..111649 (-) 984 WP_375555343.1 acetylxylan esterase -
  AAFQ93_RS00460 (AAFQ93_00460) amiF 112095..113021 (-) 927 WP_375555344.1 ATP-binding cassette domain-containing protein Regulator
  AAFQ93_RS00465 (AAFQ93_00465) amiE 113032..114099 (-) 1068 WP_375555345.1 ABC transporter ATP-binding protein Regulator
  AAFQ93_RS00470 (AAFQ93_00470) amiD 114108..115034 (-) 927 WP_049528229.1 oligopeptide ABC transporter permease OppC Regulator
  AAFQ93_RS00475 (AAFQ93_00475) amiC 115034..116530 (-) 1497 WP_375555346.1 ABC transporter permease Regulator
  AAFQ93_RS00480 (AAFQ93_00480) amiA 116596..118575 (-) 1980 WP_375555347.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39547.23 Da        Isoelectric Point: 4.8173

>NTDB_id=989125 AAFQ93_RS00465 WP_375555345.1 113032..114099(-) (amiE) [Streptococcus nidrosiense strain SO-23-1]
MIKGKNVILTAQDIVVEFDVRDKILTAIRGVSIDLIEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSINYRGQDL
TALSSHKEWESIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAQEAKEMAIDYMNKVGIPDSEKRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQHEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTELKGDAFALRSDYAMKVDFEEKAPQFAVSDTHWAK
TWLLHEQAPKVEKPAVIADLHDKIREKMGFTHLED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=989125 AAFQ93_RS00465 WP_375555345.1 113032..114099(-) (amiE) [Streptococcus nidrosiense strain SO-23-1]
ATGATAAAAGGAAAAAATGTAATTTTGACTGCTCAAGATATTGTCGTGGAATTTGATGTTCGTGACAAGATTTTGACAGC
TATTCGAGGTGTCTCCATCGATTTGATTGAGGGAGAGGTCCTCGCCTTAGTTGGGGAGTCAGGTTCAGGTAAATCAGTTT
TGACAAAAACATTCACAGGAATGTTGGAAGAAAATGGTCGTATTGCACAAGGTAGTATTAATTACCGTGGACAAGATTTG
ACAGCCTTATCTTCTCATAAAGAATGGGAAAGTATTCGTGGTGCGAAGATTGCAACTATCTTCCAAGATCCGATGACCAG
TCTAGACCCAATCAAGACAATCGGAAGTCAAATCACAGAAGTTATTGTTAAACACCAAGGCAAGACTGCTCAAGAAGCTA
AAGAGATGGCTATTGACTATATGAATAAAGTTGGTATTCCAGATTCTGAGAAACGTTTTGACGAGTATCCATTCCAATAT
TCAGGGGGAATGCGTCAACGTATCGTTATCGCGATTGCTCTTGCCTGTCGTCCAGACATTCTTATCTGTGATGAGCCGAC
AACAGCCCTTGACGTGACCATCCAAGCACAGATTATCGATTTGTTGAAATCACTTCAACATGAATACCACTTTACAACGA
TTTTCATCACTCACGACCTAGGTGTTGTAGCAAGTATTGCAGATAAAGTTGCTGTTATGTATGCTGGTGAGATTGTTGAG
TATGGTACTGTTGAAGAAATCTTCTACGATCCACGTCACCCATATACTTGGAGCCTTTTGTCAAGCTTGCCTCAGCTTGC
GGATGATAAAGGGGAGTTGTATTCAATTCCAGGAACACCTCCATCACTATATACTGAATTGAAGGGAGATGCTTTTGCTC
TTCGTTCAGATTATGCCATGAAGGTTGATTTCGAGGAGAAAGCACCTCAGTTTGCAGTGTCTGATACTCATTGGGCGAAA
ACATGGTTGCTTCATGAACAAGCTCCAAAAGTTGAAAAACCAGCAGTAATTGCAGATTTACACGATAAGATTCGTGAAAA
GATGGGCTTTACTCATCTTGAGGACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

85.915

100

0.859
  amiE Streptococcus thermophilus LMG 18311

83.944

100

0.839
  amiE Streptococcus thermophilus LMD-9

83.944

100

0.839
  oppD Streptococcus mutans UA159

53.448

98.028

0.524

Multiple sequence alignment