Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   AAFQ93_RS00470 Genome accession   NZ_CP152419
Coordinates   114108..115034 (-) Length   308 a.a.
NCBI ID   WP_049528229.1    Uniprot ID   A0A1E9ADV5
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 109108..120034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS00455 (AAFQ93_00455) - 110666..111649 (-) 984 WP_375555343.1 acetylxylan esterase -
  AAFQ93_RS00460 (AAFQ93_00460) amiF 112095..113021 (-) 927 WP_375555344.1 ATP-binding cassette domain-containing protein Regulator
  AAFQ93_RS00465 (AAFQ93_00465) amiE 113032..114099 (-) 1068 WP_375555345.1 ABC transporter ATP-binding protein Regulator
  AAFQ93_RS00470 (AAFQ93_00470) amiD 114108..115034 (-) 927 WP_049528229.1 oligopeptide ABC transporter permease OppC Regulator
  AAFQ93_RS00475 (AAFQ93_00475) amiC 115034..116530 (-) 1497 WP_375555346.1 ABC transporter permease Regulator
  AAFQ93_RS00480 (AAFQ93_00480) amiA 116596..118575 (-) 1980 WP_375555347.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34581.34 Da        Isoelectric Point: 9.2452

>NTDB_id=989126 AAFQ93_RS00470 WP_049528229.1 114108..115034(-) (amiD) [Streptococcus nidrosiense strain SO-23-1]
MSTISNEKFQFVKRDDYASEAIDAPAYSYWGSVFRQFLKKKSTVIMLGILIAIVLMSFIYPMFSDFDFNDVSKVNDFSAR
YIKPNAEYWFGTDSNGKSLFDGVWFGARNSILISVIATFVNLFIGVVIGGLWGISKSVDRIMMEVYNVINNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGVAHSIRIQMLRYRDLEYNLASRTLGTPSYKIIVKNIMPQLVSVIVTSTSQMLPAFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=989126 AAFQ93_RS00470 WP_049528229.1 114108..115034(-) (amiD) [Streptococcus nidrosiense strain SO-23-1]
ATGTCTACAATTAGTAATGAAAAATTTCAGTTTGTAAAACGTGATGATTATGCCTCTGAAGCAATTGATGCTCCTGCCTA
CTCATACTGGGGTTCTGTCTTTAGACAGTTTTTGAAGAAGAAATCAACAGTAATCATGCTAGGTATCTTGATTGCAATTG
TTTTGATGAGTTTCATTTACCCAATGTTTTCTGATTTTGACTTTAATGATGTAAGTAAGGTAAACGATTTTAGCGCTCGT
TACATTAAGCCAAATGCTGAATATTGGTTTGGAACAGACAGTAATGGTAAATCTCTCTTTGATGGTGTCTGGTTTGGGGC
TCGTAACTCTATCTTGATTTCGGTTATTGCTACCTTTGTTAACCTTTTTATCGGTGTTGTCATTGGTGGACTTTGGGGGA
TCTCAAAATCAGTTGACCGTATCATGATGGAAGTCTACAACGTTATCAACAATATTCCATCACTTTTGATCGTTATTGTT
TTGACTTACTCTATCGGGGCAGGTTTCTGGAACTTGATCTTTGCCATGAGTGTAACCACTTGGATTGGTGTTGCCCATTC
AATTCGTATCCAAATGTTACGTTACCGTGATTTAGAGTACAACCTTGCTTCACGTACCTTGGGAACACCAAGTTATAAGA
TTATTGTGAAAAACATTATGCCCCAATTGGTATCTGTTATTGTTACGAGTACGTCGCAAATGCTTCCAGCCTTTATCTCA
TATGAGGCTTTCCTATCATTCTTTGGACTTGGCTTGCCCATCACAGTACCAAGTTTGGGACGTTTGATTTCAGATTATTC
TCAGAACGTAACAACCAATGCATATCTCTTCTGGATTCCATTGACAACTTTGGTCTTGGTATCCTTGTCCCTTTTCGTAG
TAGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E9ADV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

80.844

100

0.808
  amiD Streptococcus thermophilus LMG 18311

79.545

100

0.795
  amiD Streptococcus thermophilus LMD-9

79.545

100

0.795

Multiple sequence alignment