Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   AAFQ93_RS00495 Genome accession   NZ_CP152419
Coordinates   120495..121325 (-) Length   276 a.a.
NCBI ID   WP_049503082.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 115495..126325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS00480 (AAFQ93_00480) amiA 116596..118575 (-) 1980 WP_375555347.1 peptide ABC transporter substrate-binding protein Regulator
  AAFQ93_RS00490 (AAFQ93_00490) - 118911..120242 (-) 1332 WP_049502736.1 hemolysin family protein -
  AAFQ93_RS00495 (AAFQ93_00495) endA 120495..121325 (-) 831 WP_049503082.1 DNA/RNA non-specific endonuclease Machinery gene
  AAFQ93_RS00500 (AAFQ93_00500) - 121644..121832 (-) 189 WP_049502949.1 DNA-directed RNA polymerase subunit beta -
  AAFQ93_RS00505 (AAFQ93_00505) murA 121825..123111 (-) 1287 WP_070460789.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AAFQ93_RS00510 (AAFQ93_00510) - 123137..123367 (-) 231 WP_000615324.1 DUF1146 family protein -
  AAFQ93_RS00515 (AAFQ93_00515) sepM 123424..124461 (-) 1038 WP_223140177.1 SepM family pheromone-processing serine protease Regulator
  AAFQ93_RS00520 (AAFQ93_00520) coaD 124445..124933 (-) 489 WP_375555348.1 pantetheine-phosphate adenylyltransferase -
  AAFQ93_RS00525 (AAFQ93_00525) rsmD 124923..125462 (-) 540 WP_375555349.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30254.82 Da        Isoelectric Point: 9.8217

>NTDB_id=989129 AAFQ93_RS00495 WP_049503082.1 120495..121325(-) (endA) [Streptococcus nidrosiense strain SO-23-1]
MNKKTRQALIGLLLFLLLSAGSYYIKQMQSSNTAPQTRVKQKSQSSDTPSQELAESVLTDSVKKQIKGTLEWNSAGAFIV
NNNKTNLDAKVSSKPYADNKTKTVGGETVPTVANAIMSKATRQYKDREETGNGSTSWTPAGWHQVKNLKGSYNHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQARAEDSTGQNYYESLVRKALDQNKRVRYRVTLLYATEEDLVPSASQIE
AKSSDGELEFNVVIPNVQKGIQLDYRTGEVTVTKNS

Nucleotide


Download         Length: 831 bp        

>NTDB_id=989129 AAFQ93_RS00495 WP_049503082.1 120495..121325(-) (endA) [Streptococcus nidrosiense strain SO-23-1]
ATGAATAAAAAAACAAGGCAGGCTCTAATTGGCCTCTTGCTCTTTTTGCTCTTGTCAGCAGGAAGCTACTATATTAAACA
AATGCAGTCTTCCAACACTGCACCACAAACACGAGTAAAACAAAAATCACAGTCGTCTGATACTCCAAGTCAAGAACTGG
CTGAAAGTGTACTGACCGATTCAGTTAAAAAACAAATTAAGGGCACTCTAGAGTGGAATAGCGCAGGAGCCTTTATCGTC
AATAACAATAAAACCAATCTAGACGCCAAGGTTTCAAGTAAACCCTATGCGGATAATAAAACAAAGACTGTAGGAGGAGA
GACAGTTCCCACAGTAGCGAATGCAATCATGTCAAAAGCGACCAGACAGTACAAGGACCGTGAAGAAACTGGCAATGGTT
CAACATCTTGGACGCCTGCGGGTTGGCATCAGGTTAAGAATCTAAAGGGAAGTTACAACCATGCGGTCGATAGAGGGCAT
TTGTTGGGCTATGCCTTAATCGGTGGTTTAGATGGCTTTGATGCTTCTACTAGCAATCCTAAAAACATTGCCGTACAGAC
AGCTTGGGCCAACCAAGCGCGTGCAGAAGATTCGACAGGTCAAAACTACTATGAGAGCTTGGTTCGAAAAGCCCTAGATC
AGAATAAACGAGTGCGTTACCGTGTGACGTTGCTCTATGCGACTGAGGAAGACTTGGTGCCGTCCGCATCGCAGATTGAA
GCCAAGTCCTCTGATGGGGAGCTGGAGTTTAATGTCGTTATTCCAAATGTCCAAAAGGGAATTCAGTTAGATTACCGAAC
TGGTGAGGTCACAGTCACAAAAAATAGCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(76-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

85.036

99.275

0.844
  endA Streptococcus pneumoniae D39

85.036

99.275

0.844
  endA Streptococcus pneumoniae R6

85.036

99.275

0.844
  endA Streptococcus pneumoniae TIGR4

85.036

99.275

0.844

Multiple sequence alignment