Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAG563_RS18745 Genome accession   NZ_CP152341
Coordinates   4194884..4196101 (+) Length   405 a.a.
NCBI ID   WP_009045667.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain NCIMB_15121     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4189884..4201101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG563_RS18730 (AAG563_18730) - 4190341..4193259 (+) 2919 WP_009045665.1 DUF748 domain-containing protein -
  AAG563_RS18735 (AAG563_18735) - 4193462..4193818 (-) 357 WP_009045666.1 BON domain-containing protein -
  AAG563_RS18740 (AAG563_18740) - 4194104..4194520 (-) 417 WP_007924673.1 pilin -
  AAG563_RS18745 (AAG563_18745) pilC 4194884..4196101 (+) 1218 WP_009045667.1 type II secretion system F family protein Machinery gene
  AAG563_RS18750 (AAG563_18750) pilD 4196104..4196976 (+) 873 WP_009045668.1 A24 family peptidase Machinery gene
  AAG563_RS18755 (AAG563_18755) coaE 4196973..4197596 (+) 624 WP_009045669.1 dephospho-CoA kinase -
  AAG563_RS18760 (AAG563_18760) yacG 4197593..4197796 (+) 204 WP_009045670.1 DNA gyrase inhibitor YacG -
  AAG563_RS18765 (AAG563_18765) - 4197801..4198016 (-) 216 WP_009045671.1 hypothetical protein -
  AAG563_RS18770 (AAG563_18770) - 4198082..4198771 (-) 690 WP_009045672.1 energy-coupling factor ABC transporter permease -
  AAG563_RS18775 (AAG563_18775) - 4198768..4199235 (-) 468 WP_009045673.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44515.40 Da        Isoelectric Point: 10.4761

>NTDB_id=988467 AAG563_RS18745 WP_009045667.1 4194884..4196101(+) (pilC) [Pseudomonas chlororaphis strain NCIMB_15121]
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHTPSLIRAQLRKQGINPARVRKKSSSLLQRTPPIKARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLMGELKQDIAAGSSFTSALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPMFTQLVIALSEFVQHWWWLLAGALLLSVFGLR
HARRRSPRFRHWLDVGLLKLPLVAPLMYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKQAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=988467 AAG563_RS18745 WP_009045667.1 4194884..4196101(+) (pilC) [Pseudomonas chlororaphis strain NCIMB_15121]
ATGGCGGTCAAAGCAGCAAAAGTTAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATACCCCCTCGCTGATCAGGGCCCAGTTGCGCAAGCAAGGCATCAATCCGGCCAGGGTCAGGAAGAAGTCAA
GCTCGCTGTTGCAGCGCACGCCCCCGATCAAGGCCCGCGACATCAGCCTGTTCACCCGGCAACTGGCGACCTTGATCAAG
GCCGGCGTGCCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGACAACCCGAACATGCGCAAACTGATGGGCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGCTTCACCAGCGCGCTGCGCAAGAGGCCGCGGTACTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGGGAACAGGCCGGGGCCCTGGAAACCCTGCTGGAGCGGGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACGCGGATCCGCAAGGCCATGACTTATCCCCTGGCGGTGATCTGCGTAGCGCTGGTGGTGACGGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAGTTCCAGTCGATGTTCCAGGGCTTCGGCGCGCAATTGCCCATGTTCACGCAACTGG
TCATCGCCCTCTCGGAATTCGTGCAGCACTGGTGGTGGCTGCTGGCAGGCGCGCTGTTGCTCAGTGTGTTCGGCCTGCGC
CATGCCCGCCGCCGCTCACCGCGCTTTCGCCATTGGCTGGACGTGGGCCTGCTGAAACTGCCGTTGGTAGCGCCACTGAT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGTACCTTGTCCACCACCTTCGCCGCCGGAGTGCCGCTGGTGGAGGCACTGG
GCTCGGTGGCCGGGGCCACCGGCAACCAGGTGTTCAAGCAAGCGGTGAATCGCATCAGGCAGGACGTGGCGACCGGCATG
CAGTTGCATTTTTCCATGCGTGCATCCGGCATCTTTCCCGGCATGGCCATCCAGATGACCGCCATCGGCGAAGAGTCCGG
GGCCCTGGACGGCATGCTGGAAAAGGTCGCGATCCATTATGAGGAAGAGGTCGATACCCTGGTCGACACCCTGAGCAGTC
TCATGGAGCCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.432

100

0.654
  pilC Acinetobacter baylyi ADP1

56.127

100

0.565
  pilC Acinetobacter baumannii D1279779

55.392

100

0.558
  pilC Legionella pneumophila strain ERS1305867

52.273

97.778

0.511
  pilG Neisseria gonorrhoeae MS11

41.791

99.259

0.415
  pilG Neisseria meningitidis 44/76-A

41.687

99.506

0.415
  pilC Vibrio cholerae strain A1552

42.347

96.79

0.41
  pilC Vibrio campbellii strain DS40M4

39.055

99.259

0.388

Multiple sequence alignment