Detailed information NTG0988468

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAG563_RS18750
• Genome accession: NZ_CP152341
• Coordinates: 4196104..4196976 (+)
• Length: 290 a.a.
• NCBI ID: WP_009045668.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain NCIMB_15121
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4191104..4201976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG563_RS18735 (AAG563_18735)	-	4193462..4193818 (-)	357	WP_009045666.1	BON domain-containing protein	-
AAG563_RS18740 (AAG563_18740)	-	4194104..4194520 (-)	417	WP_007924673.1	pilin	-
AAG563_RS18745 (AAG563_18745)	pilC	4194884..4196101 (+)	1218	WP_009045667.1	type II secretion system F family protein	Machinery gene
AAG563_RS18750 (AAG563_18750)	pilD	4196104..4196976 (+)	873	WP_009045668.1	A24 family peptidase	Machinery gene
AAG563_RS18755 (AAG563_18755)	coaE	4196973..4197596 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
AAG563_RS18760 (AAG563_18760)	yacG	4197593..4197796 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
AAG563_RS18765 (AAG563_18765)	-	4197801..4198016 (-)	216	WP_009045671.1	hypothetical protein	-
AAG563_RS18770 (AAG563_18770)	-	4198082..4198771 (-)	690	WP_009045672.1	energy-coupling factor ABC transporter permease	-
AAG563_RS18775 (AAG563_18775)	-	4198768..4199235 (-)	468	WP_009045673.1	hypothetical protein	-
AAG563_RS18780 (AAG563_18780)	-	4199690..4201126 (+)	1437	WP_009045674.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32046.14 Da
• Isoelectric Point: 7.7036

>NTDB_id=988468 AAG563_RS18750 WP_009045668.1 4196104..4196976(+) (pilD) [Pseudomonas chlororaphis strain NCIMB_15121]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPDEPVGPTYNLLLPHSQCPHCAHPIR
PWENIPLFSYLLLRGRCSACKAPIGRRYPLVELTCGLASASVAWHFGFGWQAGLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=988468 AAG563_RS18750 WP_009045668.1 4196104..4196976(+) (pilD) [Pseudomonas chlororaphis strain NCIMB_15121]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTCGGGC
TGCCCGACGAGCCTGTCGGGCCGACCTATAACCTGTTGCTCCCACACTCCCAGTGCCCGCACTGTGCGCACCCGATCCGC
CCCTGGGAAAACATCCCGCTGTTCAGTTACCTGCTGCTGCGCGGACGCTGCTCCGCATGCAAGGCCCCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTCCGTGGCCTGGCATTTCGGCTTCGGCTGGCAGGCCGGCC
TGATGCTGCTCCTGAGCTGGGGTCTGTTGGCGATGAGCCTGATTGACGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCCCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGACACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCCGGAGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.497	98.621	0.528
pilD	Vibrio campbellii strain DS40M4	50.877	98.276	0.5
pilD	Acinetobacter baumannii D1279779	49.815	93.448	0.466
pilD	Acinetobacter nosocomialis M2	49.815	93.448	0.466
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448