Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AAB158_RS08585 Genome accession   NZ_CP152291
Coordinates   1758766..1759998 (+) Length   410 a.a.
NCBI ID   WP_192204081.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain IMGN5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1753766..1764998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAB158_RS08560 (AAB158_08560) - 1754978..1755703 (+) 726 WP_192204078.1 SDR family oxidoreductase -
  AAB158_RS08565 (AAB158_08565) - 1755783..1756040 (+) 258 WP_192204079.1 DUF3243 domain-containing protein -
  AAB158_RS08570 (AAB158_08570) - 1756282..1757073 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  AAB158_RS08575 (AAB158_08575) - 1757082..1757990 (+) 909 WP_228467356.1 RodZ domain-containing protein -
  AAB158_RS08580 (AAB158_08580) pgsA 1758159..1758743 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAB158_RS08585 (AAB158_08585) cinA 1758766..1759998 (+) 1233 WP_192204081.1 competence/damage-inducible protein A Machinery gene
  AAB158_RS08590 (AAB158_08590) recA 1760348..1761394 (+) 1047 WP_098370967.1 recombinase RecA Machinery gene
  AAB158_RS08595 (AAB158_08595) rny 1761748..1763307 (+) 1560 WP_063231807.1 ribonuclease Y -
  AAB158_RS08600 (AAB158_08600) - 1763460..1764257 (+) 798 WP_342615364.1 TIGR00282 family metallophosphoesterase -
  AAB158_RS08605 (AAB158_08605) spoVS 1764431..1764691 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45024.28 Da        Isoelectric Point: 4.9671

>NTDB_id=988102 AAB158_RS08585 WP_192204081.1 1758766..1759998(+) (cinA) [Peribacillus frigoritolerans strain IMGN5]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKEKCEELILEAE
KEILSRVGKFHYGSDNTSLIKELVKELTIRKLSISAAESLTGGMFQEQLTTIPGAGKVFKGGIVCYTNDAKANVLGVSDD
TISEYGVVSGECAMEMASNVRNKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=988102 AAB158_RS08585 WP_192204081.1 1758766..1759998(+) (cinA) [Peribacillus frigoritolerans strain IMGN5]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGGCAAATCAATAATACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGCCGTTTACAACAAGCTATAG
AAATCGCTGAATCAAGGGCAAATTTGATTGTCTTTACCGGTGGACTTGGTCCAACCAAAGATGATTTAACGAAAGAAACG
ATTGCTCGCCATATAGGGAAAAAGCTCGTTTTTAATGATGAAGCATTGCAATCCATTGAAGCCTACTTCCAAAAAAGGGA
ACGTCCGATGACGGAAAACAACAAAAAGCAGGCCCTCGTCTTAGAAGGCAGTGAAGTGTTGGCAAACGATCATGGGATGG
CACCGGGAATGGTCTTGTCCAAATCTGGGATTACATATATGCTTCTACCTGGGCCGCCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGAATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATTGCCCCGCTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCTAAAGACTCATCTAAAGAAAAATGCGAAGAGCTTATTTTGGAAGCGGAA
AAAGAAATTCTTAGCAGGGTCGGCAAGTTCCATTATGGAAGTGATAATACCTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGATCCGCAAGCTTTCAATTTCGGCAGCTGAAAGCTTGACCGGAGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTTTTCAAAGGCGGAATAGTCTGCTATACGAATGATGCGAAGGCTAATGTCCTCGGCGTCAGTGATGAT
ACCATATCCGAGTATGGAGTGGTCAGCGGTGAGTGTGCTATGGAAATGGCCTCTAATGTCCGGAACAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGCGTTGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTAGGTACAGTATTTATTGGCATTT
CCTATCGGGATGGAAACACTCATTTCAAGGAGTTGAATCTTTCAGGAAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAA
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus mitis SK321

44.524

100

0.456
  cinA Streptococcus pneumoniae TIGR4

44.524

100

0.456
  cinA Streptococcus mitis NCTC 12261

44.286

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.048

100

0.451
  cinA Streptococcus pneumoniae R6

44.048

100

0.451
  cinA Streptococcus pneumoniae D39

43.81

100

0.449
  cinA Streptococcus mutans UA159

43.564

98.537

0.429
  cinA Streptococcus suis isolate S10

38.847

97.317

0.378

Multiple sequence alignment