Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHI46_RS08415 Genome accession   NZ_CP152042
Coordinates   1662330..1663580 (+) Length   416 a.a.
NCBI ID   WP_064498481.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1000     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1657330..1668580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI46_RS08390 (MHI46_08390) - 1658751..1659479 (+) 729 WP_039178709.1 SDR family oxidoreductase -
  MHI46_RS08395 (MHI46_08395) - 1659553..1659810 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  MHI46_RS08400 (MHI46_08400) - 1659942..1660733 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  MHI46_RS08405 (MHI46_08405) - 1660757..1661656 (+) 900 WP_059376236.1 helix-turn-helix domain-containing protein -
  MHI46_RS08410 (MHI46_08410) pgsA 1661732..1662313 (+) 582 WP_047202208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHI46_RS08415 (MHI46_08415) cinA 1662330..1663580 (+) 1251 WP_064498481.1 competence/damage-inducible protein A Machinery gene
  MHI46_RS08420 (MHI46_08420) recA 1663760..1664803 (+) 1044 WP_039178719.1 recombinase RecA Machinery gene
  MHI46_RS08425 (MHI46_08425) - 1664946..1666121 (+) 1176 WP_260775947.1 serine hydrolase domain-containing protein -
  MHI46_RS08430 (MHI46_08430) rny 1666355..1667917 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45636.70 Da        Isoelectric Point: 4.7487

>NTDB_id=986484 MHI46_RS08415 WP_064498481.1 1662330..1663580(+) (cinA) [Bacillus sp. FSL K6-1000]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSYGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=986484 MHI46_RS08415 WP_064498481.1 1662330..1663580(+) (cinA) [Bacillus sp. FSL K6-1000]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTCTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACAATTGCGAGCACGCTTGGTAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGATATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGATCAGATGTGCTCGTGAACC
GTTTCGGGATGGCTCCAGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAGGAAAAAATTGTGTCTGTTGTTCT
GCGTTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGATCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAACGTCTGTTA
AAAGAAACAGAGGCGAAAATTTTAGCGCGGGTAGGTGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAGCACGGGAAAACAGTAGCAGCAGCAGAAAGTCTGACTGGTGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTAAAGCAGCAGGTACTTGGC
TGCCGGGAAGAAACACTGTCTTCTTATGGTGCTGTCAGCAAAGAGTGCGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCGACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCAGGCATTCGAAAGCGC
GCTGTGAAATATGGTCTACATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.422

99.76

0.752
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.268

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.031

100

0.476
  cinA Streptococcus pneumoniae R6

47.031

100

0.476
  cinA Streptococcus pneumoniae D39

46.793

100

0.474
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment