Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHH61_RS17560 Genome accession   NZ_CP152033
Coordinates   3406814..3408064 (+) Length   416 a.a.
NCBI ID   WP_125586751.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3154     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3401814..3413064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH61_RS17535 (MHH61_17520) - 3403236..3403964 (+) 729 WP_024427021.1 SDR family oxidoreductase -
  MHH61_RS17540 (MHH61_17525) - 3404038..3404295 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  MHH61_RS17545 (MHH61_17530) - 3404427..3405218 (+) 792 WP_125586755.1 DUF3388 domain-containing protein -
  MHH61_RS17550 (MHH61_17535) - 3405242..3406141 (+) 900 WP_025092608.1 helix-turn-helix domain-containing protein -
  MHH61_RS17555 (MHH61_17540) pgsA 3406216..3406797 (+) 582 WP_125586753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHH61_RS17560 (MHH61_17545) cinA 3406814..3408064 (+) 1251 WP_125586751.1 competence/damage-inducible protein A Machinery gene
  MHH61_RS17565 (MHH61_17550) recA 3408241..3409284 (+) 1044 WP_024424111.1 recombinase RecA Machinery gene
  MHH61_RS17570 (MHH61_17555) - 3409429..3410604 (+) 1176 WP_125586749.1 serine hydrolase -
  MHH61_RS17575 (MHH61_17560) rny 3410838..3412400 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45537.61 Da        Isoelectric Point: 4.7414

>NTDB_id=985973 MHH61_RS17560 WP_125586751.1 3406814..3408064(+) (cinA) [Bacillus sp. FSL K6-3154]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFLKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGVGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=985973 MHH61_RS17560 WP_125586751.1 3406814..3408064(+) (cinA) [Bacillus sp. FSL K6-3154]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGTACGCTTGGCAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCAATTCAAGACTACTT
TCTAAAGACCGGACGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGGTCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCGGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAACTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAGTCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTAGCGCGGGTAGGAGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAGCACGGGAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTACTTGGC
TGCCGGGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACAGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCAGGCATTCGAAAGCGC
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus mutans UA159

47.837

100

0.478
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment