Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACOAKG_RS14685 Genome accession   NZ_CP184261
Coordinates   3304424..3305104 (-) Length   226 a.a.
NCBI ID   WP_030967071.1    Uniprot ID   A0ABP6V0R2
Organism   Streptomyces sp. JL3001     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3299424..3310104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOAKG_RS14675 (ACOAKG_14675) - 3301898..3302887 (+) 990 WP_330354206.1 hypothetical protein -
  ACOAKG_RS14680 (ACOAKG_14680) clpX 3302959..3304242 (-) 1284 WP_330354207.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACOAKG_RS14685 (ACOAKG_14685) clpP 3304424..3305104 (-) 681 WP_030967071.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACOAKG_RS14690 (ACOAKG_14690) - 3305155..3305763 (-) 609 WP_030967072.1 ATP-dependent Clp protease proteolytic subunit -
  ACOAKG_RS14695 (ACOAKG_14695) tig 3306127..3307521 (-) 1395 WP_330354208.1 trigger factor -
  ACOAKG_RS14710 (ACOAKG_14710) - 3308085..3308516 (-) 432 WP_359449483.1 DUF7144 family membrane protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25087.48 Da        Isoelectric Point: 4.5849

>NTDB_id=985723 ACOAKG_RS14685 WP_030967071.1 3304424..3305104(-) (clpP) [Streptomyces sp. JL3001]
MNDFPGSGLYARTEAEYTGPRAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEEMLAKHSTTAIEKIREDIERDKILTAEDALSYGLIDQIISTRKMNNADVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=985723 ACOAKG_RS14685 WP_030967071.1 3304424..3305104(-) (clpP) [Streptomyces sp. JL3001]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACCGAGGCCGAGTACACCGGCCCGCGCGCCGAGTCCCGTTATGT
GATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGATCCTGCTGGCCGCCGGCACGCCGG
GCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTACAGTGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGCTCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGGCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCGTACGGGCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCCGACGTTCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376