Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MHI39_RS09125 Genome accession   NZ_CP152029
Coordinates   1818452..1820851 (+) Length   799 a.a.
NCBI ID   WP_259544821.1    Uniprot ID   -
Organism   Heyndrickxia sp. FSL K6-6286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1813452..1825851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI39_RS09105 (MHI39_09105) - 1814427..1814846 (+) 420 WP_058002079.1 Rrf2 family transcriptional regulator -
  MHI39_RS09110 (MHI39_09110) - 1815059..1816207 (+) 1149 WP_259544816.1 cysteine desulfurase family protein -
  MHI39_RS09115 (MHI39_09115) mnmA 1816217..1817332 (+) 1116 WP_251337384.1 tRNA 2-thiouridine(34) synthase MnmA -
  MHI39_RS09120 (MHI39_09120) - 1817758..1818426 (+) 669 WP_259544819.1 tetratricopeptide repeat protein -
  MHI39_RS09125 (MHI39_09125) recD2 1818452..1820851 (+) 2400 WP_259544821.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MHI39_RS09130 (MHI39_09130) - 1820972..1821691 (+) 720 WP_071975005.1 YebC/PmpR family DNA-binding transcriptional regulator -
  MHI39_RS09135 (MHI39_09135) - 1821992..1822510 (+) 519 WP_342541133.1 PRC-barrel domain-containing protein -
  MHI39_RS09140 (MHI39_09140) - 1822482..1822670 (+) 189 WP_058002086.1 hypothetical protein -
  MHI39_RS09145 (MHI39_09145) - 1822693..1822827 (+) 135 WP_251337378.1 YrzQ family protein -
  MHI39_RS09150 (MHI39_09150) - 1822921..1823997 (+) 1077 WP_342541134.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90960.15 Da        Isoelectric Point: 5.0538

>NTDB_id=985722 MHI39_RS09125 WP_259544821.1 1818452..1820851(+) (recD2) [Heyndrickxia sp. FSL K6-6286]
MLEQQNSLDLFANDEKYIRGRHLVTIFHNEQNLYSVIRIRVDETNLEYNEKEAVITGHFPKIHEQETYIFYGDMQEHPKF
GPQFQAKHFKKEIPQTKQGIITYLSSEIFSGIGKKTAERIVEELGENAISKILDQPTILDSIPKLPSEKAKSLYDKLIEH
QGLERVMIGLNQFGFGPQISMKIYQVYKEQSLEIIQKNPFQLVEDIEGIGFGRADEIGKQLGLVGNHPDRIKAACMYTLE
QECLQNGHVYMDSEDLLPKVKKLLEESQPITIEYTDISAEIIKLAEEGKLIGETQKLYIPSLYFSEKGIVTNVQRILQQE
EYQDQFPESEFLLALGELEERIGVQYAPSQKEAIQKALMSPMMILTGGPGTGKTTVIKGIVELYAELNGCSLDPKKYNKE
NPFPIVLTAPTGRAAKRMAESTGLPAMTIHRLLGMTGQEDLDTDDEKKVDGKLVIVDEMSMVDTWLAHQLLKALPDHIQV
IFVGDEDQLPSVGPGQVLKDLLRSKVIPTVQLTDIYRQENGSSIIELAHEIKNGHIPEDVTKQQKDRSFIRCTSGQIPEV
IEKVVSSAKRKGYTQKDVQVLAPMYRGPAGIDRLNVLLQEIFNPNDTGNRKEISFGESKYRIGDKVLQLVNQPEKHVFNG
DIGEIISIFYAKENTEKQDLILVSFDGIEVTYSRQDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRKLLYTAI
TRSKQSLIICGEEEAFRIGIEREDDQQRKTSLYDKLCILEKINPQEENKGEIFIFNEENMFKVDPMIGMENITPYDFLS

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=985722 MHI39_RS09125 WP_259544821.1 1818452..1820851(+) (recD2) [Heyndrickxia sp. FSL K6-6286]
ATGTTGGAACAGCAAAACTCACTTGATTTATTTGCAAACGATGAAAAATATATAAGGGGACGTCATCTCGTTACCATTTT
TCATAATGAACAAAATCTATACTCTGTCATAAGGATAAGGGTGGACGAAACGAATCTTGAATATAACGAAAAAGAAGCTG
TAATTACAGGTCATTTTCCTAAAATACATGAGCAGGAAACGTATATTTTTTATGGAGATATGCAAGAGCATCCAAAGTTT
GGTCCTCAATTTCAAGCTAAACATTTTAAAAAAGAAATACCGCAAACGAAACAAGGTATTATTACTTATTTATCAAGTGA
AATATTTAGTGGGATAGGTAAAAAAACAGCGGAACGGATTGTTGAGGAGCTCGGTGAAAATGCGATCAGTAAAATCCTTG
ATCAGCCAACCATACTAGATAGTATCCCAAAACTACCATCTGAAAAGGCTAAGAGCTTATATGATAAATTAATTGAACAT
CAAGGTCTGGAACGTGTGATGATTGGTCTAAACCAATTTGGTTTTGGGCCACAAATATCAATGAAAATTTATCAAGTTTA
TAAAGAACAGTCATTAGAAATAATCCAAAAAAATCCCTTTCAGTTAGTTGAAGATATTGAAGGAATTGGTTTTGGCCGAG
CGGATGAAATTGGTAAACAATTAGGGCTGGTAGGCAATCATCCTGATCGGATTAAAGCAGCATGTATGTATACATTGGAG
CAGGAATGTCTTCAAAATGGTCATGTATACATGGATTCAGAGGATTTACTTCCTAAAGTTAAGAAATTATTGGAAGAGTC
TCAACCTATTACAATCGAATATACTGATATTTCGGCTGAAATTATTAAGCTAGCTGAAGAGGGAAAATTAATTGGAGAAA
CCCAAAAATTATACATCCCATCCCTCTATTTTTCAGAAAAAGGCATTGTAACAAATGTACAACGTATACTTCAACAAGAG
GAGTATCAAGATCAATTTCCAGAATCCGAATTTTTACTGGCATTAGGGGAACTTGAGGAAAGGATTGGAGTACAATATGC
ACCATCTCAAAAAGAAGCAATCCAAAAAGCATTGATGTCTCCAATGATGATATTAACTGGGGGTCCTGGAACTGGAAAAA
CAACTGTCATAAAGGGGATTGTTGAACTTTATGCAGAACTAAATGGGTGCTCTCTCGATCCTAAAAAGTATAATAAGGAA
AACCCCTTTCCGATCGTATTGACTGCACCTACTGGAAGAGCTGCAAAAAGAATGGCGGAATCAACAGGTTTGCCGGCTAT
GACGATTCATCGTTTATTAGGGATGACGGGACAAGAGGATTTAGATACAGATGACGAGAAAAAGGTTGATGGTAAGCTTG
TTATTGTAGATGAAATGTCTATGGTTGATACTTGGCTAGCACATCAATTGCTTAAGGCTTTACCTGATCATATACAGGTT
ATATTTGTAGGAGATGAAGACCAGCTTCCTTCTGTTGGACCAGGACAAGTATTAAAAGATTTATTAAGGTCTAAGGTTAT
CCCTACTGTACAATTGACAGATATCTATCGCCAAGAAAATGGCTCATCCATCATTGAACTCGCTCATGAAATCAAGAATG
GTCATATCCCAGAGGATGTGACAAAGCAACAAAAAGATCGATCATTTATACGTTGTACCTCAGGACAAATCCCTGAAGTG
ATCGAGAAAGTCGTATCAAGTGCAAAAAGAAAAGGTTATACCCAAAAAGATGTACAAGTTCTCGCGCCAATGTATCGAGG
ACCTGCAGGGATCGATCGGTTAAATGTTTTGTTACAAGAAATTTTTAATCCGAATGATACAGGAAATCGGAAGGAAATTA
GTTTTGGTGAGAGTAAATATCGAATTGGAGACAAAGTTTTACAACTTGTCAATCAACCGGAGAAACATGTCTTTAATGGT
GATATAGGTGAAATCATATCGATTTTCTATGCAAAGGAAAATACGGAAAAACAAGACCTGATCCTTGTATCGTTTGATGG
AATTGAGGTCACTTATTCCCGACAGGATTTTAATCAATTTACCCATGCATACTGTTGCTCAATTCACAAATCACAAGGAA
GTGAATTTCCGATCGTTATCCTTCCTGTTGTAAAAAGTTATTATCGAATGCTTAGAAGAAAGTTGTTGTATACGGCAATA
ACGAGAAGTAAGCAATCCTTAATTATTTGTGGTGAAGAAGAAGCATTTCGGATTGGAATTGAAAGAGAAGATGATCAACA
AAGGAAGACAAGTCTATATGATAAATTATGTATCCTAGAGAAAATAAACCCTCAAGAAGAAAATAAAGGTGAAATATTTA
TTTTTAACGAGGAAAATATGTTCAAAGTTGATCCAATGATTGGAATGGAAAATATTACACCGTATGATTTTTTAAGTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

AAA domain (AAA_30)

(346-554)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.902

99.875

0.608

Multiple sequence alignment