Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACN6AT_RS23845 Genome accession   NZ_CP184255
Coordinates   5182713..5183381 (+) Length   222 a.a.
NCBI ID   WP_361607159.1    Uniprot ID   -
Organism   Streptomyces sp. JL4002     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5177713..5188381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6AT_RS23810 (ACN6AT_23805) - 5178478..5178933 (+) 456 WP_420080803.1 HD domain-containing protein -
  ACN6AT_RS23815 (ACN6AT_23810) - 5179146..5179340 (+) 195 WP_030008564.1 membrane protein -
  ACN6AT_RS23820 (ACN6AT_23815) - 5179398..5179793 (-) 396 WP_420080804.1 DUF6578 domain-containing protein -
  ACN6AT_RS23835 (ACN6AT_23830) tig 5180376..5181761 (+) 1386 WP_361607162.1 trigger factor -
  ACN6AT_RS23840 (ACN6AT_23835) - 5182039..5182656 (+) 618 WP_030026957.1 ATP-dependent Clp protease proteolytic subunit -
  ACN6AT_RS23845 (ACN6AT_23840) clpP 5182713..5183381 (+) 669 WP_361607159.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACN6AT_RS23850 (ACN6AT_23845) clpX 5183535..5184821 (+) 1287 WP_361607156.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACN6AT_RS23855 (ACN6AT_23850) - 5184899..5185822 (-) 924 WP_389073008.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24501.91 Da        Isoelectric Point: 4.6830

>NTDB_id=985669 ACN6AT_RS23845 WP_361607159.1 5182713..5183381(+) (clpP) [Streptomyces sp. JL4002]
MVNTQMQNNFSASGLYSGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDL
EIAANEILRMRDQLETMLAKHSTTPIEKIREDIERDKILTAEDALAYGLVDQIISTRKSNKL

Nucleotide


Download         Length: 669 bp        

>NTDB_id=985669 ACN6AT_RS23845 WP_361607159.1 5182713..5183381(+) (clpP) [Streptomyces sp. JL4002]
ATGGTGAACACCCAGATGCAGAACAACTTCTCCGCGAGCGGCCTCTACTCCGGCCCGCAGGTGGACAACCGCTACGTCAT
CCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCATACGCGAAGCTCTTCGAGGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCCGAC
CGTGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGT
GAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGTACGCCCGGCA
AGCGCATGGCCCTGCCGAACGCCCGCGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGTGAGCAGCTCTCGGACCTG
GAGATCGCGGCCAACGAGATCCTGCGCATGCGCGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACCACGCCGATCGA
GAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCTCTCGCGTACGGGCTGGTCGACCAGATCA
TCTCCACCCGCAAGAGCAACAAGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.531

88.288

0.455
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

84.685

0.419
  clpP Streptococcus pyogenes MGAS315

46.842

85.586

0.401
  clpP Streptococcus pyogenes JRS4

46.842

85.586

0.401
  clpP Streptococcus thermophilus LMD-9

45.876

87.387

0.401
  clpP Streptococcus thermophilus LMG 18311

45.876

87.387

0.401
  clpP Streptococcus mutans UA159

46.316

85.586

0.396
  clpP Streptococcus pneumoniae Rx1

44.898

88.288

0.396
  clpP Streptococcus pneumoniae D39

44.898

88.288

0.396
  clpP Streptococcus pneumoniae TIGR4

44.898

88.288

0.396
  clpP Streptococcus pneumoniae R6

44.898

88.288

0.396
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

86.036

0.387
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

86.036

0.378