Detailed information NTG0985670

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACN6AT_RS23850
• Genome accession: NZ_CP184255
• Coordinates: 5183535..5184821 (+)
• Length: 428 a.a.
• NCBI ID: WP_361607156.1
• Uniprot ID: -
• Organism: Streptomyces sp. JL4002
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5178535..5189821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN6AT_RS23815 (ACN6AT_23810)	-	5179146..5179340 (+)	195	WP_030008564.1	membrane protein	-
ACN6AT_RS23820 (ACN6AT_23815)	-	5179398..5179793 (-)	396	WP_420080804.1	DUF6578 domain-containing protein	-
ACN6AT_RS23835 (ACN6AT_23830)	tig	5180376..5181761 (+)	1386	WP_361607162.1	trigger factor	-
ACN6AT_RS23840 (ACN6AT_23835)	-	5182039..5182656 (+)	618	WP_030026957.1	ATP-dependent Clp protease proteolytic subunit	-
ACN6AT_RS23845 (ACN6AT_23840)	clpP	5182713..5183381 (+)	669	WP_361607159.1	ATP-dependent Clp protease proteolytic subunit	Regulator
ACN6AT_RS23850 (ACN6AT_23845)	clpX	5183535..5184821 (+)	1287	WP_361607156.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACN6AT_RS23855 (ACN6AT_23850)	-	5184899..5185822 (-)	924	WP_389073008.1	hypothetical protein	-
ACN6AT_RS23860 (ACN6AT_23855)	-	5185953..5188574 (+)	2622	WP_365137841.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46932.84 Da
• Isoelectric Point: 4.7778

>NTDB_id=985670 ACN6AT_RS23850 WP_361607156.1 5183535..5184821(+) (clpX) [Streptomyces sp. JL4002]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGQGREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVRSNVNPTLVPRIVPKDQGPHEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=985670 ACN6AT_RS23850 WP_361607156.1 5183535..5184821(+) (clpX) [Streptomyces sp. JL4002]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAGCTCGCGGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCCCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCCCTCTCGGTGGCGGTCTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGCGGGCAGGGCCG
CGAGGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTCGGCCCGACGGGCTCCGGCAAGACCCTCCTCGCGCAGA
CGCTCGCGCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAT
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAAAACCCGTCGATCACGCGCGACGTGAGCGGTGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACGGCGTCGGTGCCGCCGCAGGGCGGGCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGTGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGCGCGGGTGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCCAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTGCCCGTCATCACCTCGGTGCACAACCTGGACCGC
GAGGCGCTGCTGCAGATCCTGATCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGGCTGTTCGAACTCGACGGTGT
GGAGCTGGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCGGACCAGGCGATCCTCCGCCAGACGGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTGCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACG
GCGGACGTGGTCCGCTCCAACGTCAACCCGACGCTGGTCCCGCGCATCGTCCCCAAGGACCAGGGCCCGCACGAGAAGTC
GGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	93.925	0.598
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.771	96.028	0.516