Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   R8611_RS09570 Genome accession   NZ_AP026927
Coordinates   1866974..1867387 (-) Length   137 a.a.
NCBI ID   WP_000265631.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1861974..1872387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS09540 (PC0174_18590) - 1862669..1863493 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  R8611_RS09545 (PC0174_18600) rnpA 1863468..1863839 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R8611_RS09550 - 1863856..1863987 (-) 132 WP_000768904.1 hypothetical protein -
  R8611_RS09555 (PC0174_18610) - 1863988..1865178 (-) 1191 WP_317647937.1 acetate kinase -
  R8611_RS09560 (PC0174_18620) comYH 1865229..1866182 (-) 954 WP_050199846.1 class I SAM-dependent methyltransferase Machinery gene
  R8611_RS09565 - 1866243..1866837 (-) 595 Protein_1865 class I SAM-dependent methyltransferase -
  R8611_RS09570 (PC0174_18650) comGG/cglG 1866974..1867387 (-) 414 WP_000265631.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8611_RS09575 (PC0174_18660) comGF/cglF 1867365..1867826 (-) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8611_RS09580 (PC0174_18670) comGE/cglE 1867789..1868091 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8611_RS09585 (PC0174_18680) comGD/cglD 1868054..1868458 (-) 405 WP_050199843.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8611_RS09590 (PC0174_18690) comGC/cglC 1868451..1868777 (-) 327 WP_317647938.1 comG operon protein ComGC Machinery gene
  R8611_RS09595 (PC0174_18700) comGB/cglB 1868779..1869795 (-) 1017 WP_317648071.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8611_RS09600 (PC0174_18710) comGA/cglA/cilD 1869743..1870684 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  R8611_RS09605 (PC0174_18720) - 1870760..1871125 (-) 366 WP_000286415.1 DUF1033 family protein -
  R8611_RS09610 (PC0174_18730) - 1871276..1872334 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15892.33 Da        Isoelectric Point: 10.2476

>NTDB_id=98536 R8611_RS09570 WP_000265631.1 1866974..1867387(-) (comGG/cglG) [Streptococcus pneumoniae strain PZ900700178]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=98536 R8611_RS09570 WP_000265631.1 1866974..1867387(-) (comGG/cglG) [Streptococcus pneumoniae strain PZ900700178]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCTATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

86.131

100

0.861

  comGG/cglG Streptococcus pneumoniae Rx1

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae D39

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae R6

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

85.401

0.81

  comGG/cglG Streptococcus mitis NCTC 12261

90.909

88.321

0.803

  comYG Streptococcus mutans UA140

39.552

97.81

0.387

  comYG Streptococcus mutans UA159

39.552

97.81

0.387


Multiple sequence alignment