Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   R8611_RS09560 Genome accession   NZ_AP026927
Coordinates   1865229..1866182 (-) Length   317 a.a.
NCBI ID   WP_050199846.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1860229..1871182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS09530 (PC0174_18570) - 1860990..1861613 (-) 624 WP_000932660.1 hypothetical protein -
  R8611_RS09535 (PC0174_18580) jag 1861664..1862650 (-) 987 WP_000260021.1 RNA-binding cell elongation regulator Jag/EloR -
  R8611_RS09540 (PC0174_18590) - 1862669..1863493 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  R8611_RS09545 (PC0174_18600) rnpA 1863468..1863839 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R8611_RS09550 - 1863856..1863987 (-) 132 WP_000768904.1 hypothetical protein -
  R8611_RS09555 (PC0174_18610) - 1863988..1865178 (-) 1191 WP_317647937.1 acetate kinase -
  R8611_RS09560 (PC0174_18620) comYH 1865229..1866182 (-) 954 WP_050199846.1 class I SAM-dependent methyltransferase Machinery gene
  R8611_RS09565 - 1866243..1866837 (-) 595 Protein_1865 class I SAM-dependent methyltransferase -
  R8611_RS09570 (PC0174_18650) comGG/cglG 1866974..1867387 (-) 414 WP_000265631.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8611_RS09575 (PC0174_18660) comGF/cglF 1867365..1867826 (-) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8611_RS09580 (PC0174_18670) comGE/cglE 1867789..1868091 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8611_RS09585 (PC0174_18680) comGD/cglD 1868054..1868458 (-) 405 WP_050199843.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8611_RS09590 (PC0174_18690) comGC/cglC 1868451..1868777 (-) 327 WP_317647938.1 comG operon protein ComGC Machinery gene
  R8611_RS09595 (PC0174_18700) comGB/cglB 1868779..1869795 (-) 1017 WP_317648071.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8611_RS09600 (PC0174_18710) comGA/cglA/cilD 1869743..1870684 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  R8611_RS09605 (PC0174_18720) - 1870760..1871125 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35759.90 Da        Isoelectric Point: 4.2215

>NTDB_id=98535 R8611_RS09560 WP_050199846.1 1865229..1866182(-) (comYH) [Streptococcus pneumoniae strain PZ900700178]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=98535 R8611_RS09560 WP_050199846.1 1865229..1866182(-) (comYH) [Streptococcus pneumoniae strain PZ900700178]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTACTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment