Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MKY08_RS05120 Genome accession   NZ_CP151996
Coordinates   1123721..1124980 (+) Length   419 a.a.
NCBI ID   WP_069510056.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL M8-0337     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1118721..1129980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY08_RS05090 (MKY08_05090) - 1118801..1120099 (+) 1299 WP_069510059.1 pitrilysin family protein -
  MKY08_RS05095 (MKY08_05095) - 1120099..1120827 (+) 729 WP_069510058.1 SDR family oxidoreductase -
  MKY08_RS05100 (MKY08_05100) - 1120876..1121133 (+) 258 WP_024361966.1 DUF3243 domain-containing protein -
  MKY08_RS05105 (MKY08_05105) - 1121361..1122149 (+) 789 WP_069510765.1 DUF3388 domain-containing protein -
  MKY08_RS05110 (MKY08_05110) - 1122166..1123077 (+) 912 WP_172583013.1 RodZ domain-containing protein -
  MKY08_RS05115 (MKY08_05115) pgsA 1123125..1123703 (+) 579 WP_024361963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY08_RS05120 (MKY08_05120) cinA 1123721..1124980 (+) 1260 WP_069510056.1 competence/damage-inducible protein A Machinery gene
  MKY08_RS05125 (MKY08_05125) recA 1125235..1126299 (+) 1065 WP_069510054.1 recombinase RecA Machinery gene
  MKY08_RS05130 (MKY08_05130) rny 1126746..1128305 (+) 1560 WP_069510052.1 ribonuclease Y -
  MKY08_RS05135 (MKY08_05135) - 1128643..1129341 (+) 699 WP_069510050.1 Wzz/FepE/Etk N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45206.76 Da        Isoelectric Point: 5.4168

>NTDB_id=984079 MKY08_RS05120 WP_069510056.1 1123721..1124980(+) (cinA) [Lysinibacillus sp. FSL M8-0337]
MNAEILAVGSELLLGQITNTNAKFISNQLSELGINVFYHTVVGDNSKRLEEAISIAESRANLIIFSGGLGPTKDDLTKET
IARHLGVDLVFDQVALTYIEEFFAKRGRSMTENNRKQALVLAGSEVLANHHGMAPGMILTKDNCTYILLPGPPKELEPMF
QFEAKPKLGKMLNDGGVIVSHVMRFYGIGEAELEVRVQDILDTQTNPTVAPLAADGEVTLRVTAKAQSEHEAHQLIAAKV
AEIRAIVGDYQYGVNDDSLASKTVEMLQDNNLTIAAAESLTAGLFQSELAEIPGVGNVLIGGVVTYTEDAKVKQLGISQQ
LLDTHGIVSSECAAAMASAVLQKFGTSIGIGLTGAAGPTAHDHQPVGTVWIGIAIGDEEPITYLLHLSGMRNTNRLRAVK
FTCHYLMQQLEVRGYKKRM

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=984079 MKY08_RS05120 WP_069510056.1 1123721..1124980(+) (cinA) [Lysinibacillus sp. FSL M8-0337]
ATGAATGCTGAAATCCTTGCAGTTGGCTCAGAGTTATTACTTGGACAGATTACAAATACAAATGCAAAATTTATTTCAAA
TCAGCTATCTGAGTTAGGAATTAATGTGTTTTATCATACCGTTGTTGGTGACAATTCAAAACGGTTAGAAGAAGCCATTA
GCATAGCGGAATCGCGCGCTAATCTCATTATTTTTTCAGGAGGCTTAGGTCCAACGAAGGATGATTTGACGAAGGAGACG
ATTGCTCGTCATCTTGGGGTAGACCTTGTATTCGATCAAGTTGCATTAACATACATTGAGGAGTTTTTTGCTAAACGAGG
CCGTTCAATGACGGAAAATAATCGCAAGCAGGCGCTAGTATTAGCAGGTAGTGAGGTGCTTGCTAATCATCATGGTATGG
CACCGGGAATGATTTTAACAAAAGATAATTGCACTTATATTTTACTTCCGGGCCCACCAAAAGAATTAGAGCCGATGTTC
CAATTTGAAGCGAAGCCAAAGCTTGGTAAAATGCTTAACGATGGCGGAGTGATTGTGTCTCACGTAATGCGTTTTTATGG
TATTGGAGAAGCAGAGTTAGAAGTGCGTGTGCAGGATATTTTAGATACACAAACCAATCCAACGGTTGCCCCGCTAGCAG
CTGATGGAGAGGTCACTTTACGCGTAACAGCAAAGGCCCAATCAGAGCACGAAGCGCATCAGTTGATTGCTGCAAAAGTG
GCAGAAATTCGTGCTATTGTTGGCGACTATCAATATGGCGTAAATGATGACTCACTTGCCTCAAAAACGGTGGAAATGTT
ACAGGACAATAATTTAACGATTGCTGCGGCAGAAAGTTTAACAGCTGGTTTATTTCAATCAGAGCTGGCTGAAATACCAG
GGGTAGGCAATGTGCTCATTGGAGGAGTAGTGACCTATACCGAAGATGCGAAGGTCAAGCAGCTTGGCATTTCTCAACAA
TTATTAGATACGCATGGTATTGTGAGCAGTGAATGTGCAGCGGCAATGGCTAGTGCAGTACTTCAAAAATTTGGTACAAG
TATCGGTATCGGGCTAACAGGTGCGGCTGGTCCTACGGCACATGATCATCAGCCGGTAGGAACGGTATGGATTGGTATTG
CAATAGGTGACGAAGAGCCAATTACGTATTTACTTCACTTATCCGGTATGCGCAATACAAACCGATTGCGTGCCGTGAAG
TTTACTTGTCACTATTTAATGCAGCAATTGGAAGTACGAGGTTACAAGAAACGTATGTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.427

98.329

0.516
  cinA Streptococcus mitis SK321

45.692

91.408

0.418
  cinA Streptococcus pneumoniae TIGR4

45.692

91.408

0.418
  cinA Streptococcus pneumoniae Rx1

45.692

91.408

0.418
  cinA Streptococcus pneumoniae R6

45.692

91.408

0.418
  cinA Streptococcus pneumoniae D39

45.431

91.408

0.415
  cinA Streptococcus mitis NCTC 12261

45.17

91.408

0.413
  cinA Streptococcus mutans UA159

45.238

90.215

0.408
  cinA Streptococcus suis isolate S10

39.947

90.215

0.36

Multiple sequence alignment