Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSQ70_RS08305 Genome accession   NZ_CP151992
Coordinates   1649465..1650715 (+) Length   416 a.a.
NCBI ID   WP_100325017.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0397     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1644465..1655715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ70_RS08280 (NSQ70_08280) - 1645877..1646605 (+) 729 WP_159159627.1 SDR family oxidoreductase -
  NSQ70_RS08285 (NSQ70_08285) - 1646678..1646935 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  NSQ70_RS08290 (NSQ70_08290) - 1647067..1647858 (+) 792 WP_039166619.1 DUF3388 domain-containing protein -
  NSQ70_RS08295 (NSQ70_08295) - 1647882..1648793 (+) 912 WP_041507265.1 helix-turn-helix domain-containing protein -
  NSQ70_RS08300 (NSQ70_08300) pgsA 1648867..1649448 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ70_RS08305 (NSQ70_08305) cinA 1649465..1650715 (+) 1251 WP_100325017.1 competence/damage-inducible protein A Machinery gene
  NSQ70_RS08310 (NSQ70_08310) recA 1650893..1651936 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  NSQ70_RS08315 (NSQ70_08315) rny 1652237..1653799 (+) 1563 WP_003211958.1 ribonuclease Y -
  NSQ70_RS08320 (NSQ70_08320) - 1653889..1654683 (+) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  NSQ70_RS08325 (NSQ70_08325) spoVS 1654886..1655146 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45613.74 Da        Isoelectric Point: 4.9193

>NTDB_id=983921 NSQ70_RS08305 WP_100325017.1 1649465..1650715(+) (cinA) [Bacillus sp. FSL R5-0397]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGNTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKDS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=983921 NSQ70_RS08305 WP_100325017.1 1649465..1650715(+) (cinA) [Bacillus sp. FSL R5-0397]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGCGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTAATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTTAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCGTTAGAGCTCGCCGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGACCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGATAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.638

99.519

0.743
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment