Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSQ25_RS08250 Genome accession   NZ_CP151982
Coordinates   1627740..1628990 (+) Length   416 a.a.
NCBI ID   WP_326136425.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0512     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1622740..1633990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ25_RS08225 (NSQ25_08225) - 1624160..1624891 (+) 732 WP_081124409.1 SDR family oxidoreductase -
  NSQ25_RS08230 (NSQ25_08230) - 1624965..1625222 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  NSQ25_RS08235 (NSQ25_08235) - 1625354..1626145 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  NSQ25_RS08240 (NSQ25_08240) - 1626169..1627068 (+) 900 WP_326136426.1 RodZ domain-containing protein -
  NSQ25_RS08245 (NSQ25_08245) pgsA 1627142..1627723 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ25_RS08250 (NSQ25_08250) cinA 1627740..1628990 (+) 1251 WP_326136425.1 competence/damage-inducible protein A Machinery gene
  NSQ25_RS08255 (NSQ25_08255) recA 1629168..1630211 (+) 1044 WP_034281901.1 recombinase RecA Machinery gene
  NSQ25_RS08260 (NSQ25_08260) rny 1630520..1632082 (+) 1563 WP_003211958.1 ribonuclease Y -
  NSQ25_RS08265 (NSQ25_08265) - 1632173..1632967 (+) 795 WP_024424109.1 TIGR00282 family metallophosphoesterase -
  NSQ25_RS08270 (NSQ25_08270) spoVS 1633170..1633430 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45597.71 Da        Isoelectric Point: 4.7414

>NTDB_id=983307 NSQ25_RS08250 WP_326136425.1 1627740..1628990(+) (cinA) [Bacillus sp. FSL R5-0512]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASSLGKELVLNEEAFESIQDYFLKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREAFKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=983307 NSQ25_RS08250 WP_326136425.1 1627740..1628990(+) (cinA) [Bacillus sp. FSL R5-0512]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTTGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCCGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAAGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGCTCGCTTGGGAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCTAAAGACCGGACGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGGTCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCGGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGACGCTCAAACGAATCCGACAATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTGGCGCGGGTAGGTGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
ATTCAAAGCCTTGCACGAGCACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTACTTGGC
TGCCGGGAGGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGAGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGGCCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.94

99.76

0.748
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.981

100

0.486
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.743

100

0.483
  cinA Streptococcus pneumoniae R6

47.743

100

0.483
  cinA Streptococcus pneumoniae D39

47.506

100

0.481
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394

Multiple sequence alignment